annotate report_clonality/naive_cdr3_char.htm @ 39:bad6a9a53ae7 draft

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author davidvanzessen
date Mon, 24 Apr 2017 09:39:59 -0400
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7 <!--
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44 </style>
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46 </head>
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47
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48 <body lang=EN-US>
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50 <div class=WordSection1>
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53 text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt;
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54 font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p>
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55
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57 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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58 font-family:"Times New Roman","serif"'>This tab gives information on the
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59 different characteristics of the CDR3.</span></p>
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60
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61 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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62 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
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63 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
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66 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
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67 font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
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69 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
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70 text-align:justify;line-height:normal'><span style='font-size:12.0pt;
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71 font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
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72 distribution of the CDR3 length in amino acids between all sequences.</span></p>
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73
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74 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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75 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
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76 font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
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78 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
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79 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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80 font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
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81 frequent each amino acid is used in the CDR3 of all sequences. The red colour
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82 in the background indicate positively charged amino acids, and the blue colour
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83 in the background indicate negatively charged amino acids. The amino acids are
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84 ordered from hydrophilic (left) to hydrophobic (right). </span></p>
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85
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86 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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87 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
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88 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
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91 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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92 font-family:"Times New Roman","serif"'>Table showing for each donor the median
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93 CDR3 length.</span></p>
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94
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95 <p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p>
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97 </div>
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98
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99 </body>
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100
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101 </html>