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comparison report_clonality/naive_cdr3_char.htm @ 18:5d11c9139a55 draft

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author davidvanzessen
date Wed, 21 Dec 2016 11:53:03 -0500
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17:da95be204ebc 18:5d11c9139a55
1 <html>
2
3 <head>
4 <meta http-equiv=Content-Type content="text/html; charset=windows-1252">
5 <meta name=Generator content="Microsoft Word 14 (filtered)">
6 <style>
7 <!--
8 /* Font Definitions */
9 @font-face
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37 </style>
38
39 </head>
40
41 <body lang=EN-US>
42
43 <div class=WordSection1>
44
45 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
46 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
47 font-family:"Times New Roman","serif"'>This tab gives information on the
48 different characteristics of the CDR3.</span></p>
49
50 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
51 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
52 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
53
54 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
55 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
56 font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
57
58 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
59 text-align:justify;line-height:normal'><span style='font-size:12.0pt;
60 font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
61 distribution of the CDR3 length in amino acids between all sequences.</span></p>
62
63
64 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
65 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
66 font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
67
68 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
69 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
70 font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
71 frequent each amino acid is used in the CDR3 of all sequences. The red colour
72 in the background indicate positively charged amino acids, and the blue colour
73 in the background indicate negatively charged amino acids. The amino acids are
74 ordered from hydrophilic (left) to hydrophobic (right). </span></p>
75
76 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
77 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
78 font-family:"Times New Roman","serif"'>D reading frame</span></u></p>
79
80 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
81 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
82 font-family:"Times New Roman","serif"'>Bar graph visualizing the frequency by
83 which each D reading frame is used in each donor.</span></p>
84
85 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
86 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
87 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
88
89 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
90 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
91 font-family:"Times New Roman","serif"'>Table showing for each donor the median
92 CDR3 length.</span></p>
93
94 <p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p>
95
96 </div>
97
98 </body>
99
100 </html>