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comparison report_clonality/naive_cdr3_char.htm @ 27:b539aeb75980 draft

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author davidvanzessen
date Tue, 28 Feb 2017 08:10:34 -0500
parents 5d11c9139a55
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26:28fbbdfd7a87 27:b539aeb75980
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53 text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt;
54 font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p>
55
56 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
46 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; 57 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
47 font-family:"Times New Roman","serif"'>This tab gives information on the 58 font-family:"Times New Roman","serif"'>This tab gives information on the
48 different characteristics of the CDR3.</span></p> 59 different characteristics of the CDR3.</span></p>
49 60
50 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 61 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
51 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: 62 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
52 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p> 63 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
53 64
54 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 65 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
55 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; 66 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
56 font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p> 67 font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
57 68
58 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 69 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
59 text-align:justify;line-height:normal'><span style='font-size:12.0pt; 70 text-align:justify;line-height:normal'><span style='font-size:12.0pt;
60 font-family:"Times New Roman","serif"'>Graph visualizing for each donor the 71 font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
61 distribution of the CDR3 length in amino acids between all sequences.</span></p> 72 distribution of the CDR3 length in amino acids between all sequences.</span></p>
62
63 73
64 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 74 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
65 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; 75 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
66 font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p> 76 font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
67 77
68 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 78 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
69 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; 79 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
70 font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how 80 font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
71 frequent each amino acid is used in the CDR3 of all sequences. The red colour 81 frequent each amino acid is used in the CDR3 of all sequences. The red colour
72 in the background indicate positively charged amino acids, and the blue colour 82 in the background indicate positively charged amino acids, and the blue colour
73 in the background indicate negatively charged amino acids. The amino acids are 83 in the background indicate negatively charged amino acids. The amino acids are
74 ordered from hydrophilic (left) to hydrophobic (right). </span></p> 84 ordered from hydrophilic (left) to hydrophobic (right). </span></p>
75 85
76 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 86 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
77 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
78 font-family:"Times New Roman","serif"'>D reading frame</span></u></p>
79
80 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
81 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
82 font-family:"Times New Roman","serif"'>Bar graph visualizing the frequency by
83 which each D reading frame is used in each donor.</span></p>
84
85 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
86 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: 87 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
87 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p> 88 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
88 89
89 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 90 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
90 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; 91 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
91 font-family:"Times New Roman","serif"'>Table showing for each donor the median 92 font-family:"Times New Roman","serif"'>Table showing for each donor the median
92 CDR3 length.</span></p> 93 CDR3 length.</span></p>
93 94
94 <p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p> 95 <p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p>