Mercurial > repos > davidvanzessen > argalaxy_tools
comparison report_clonality/r_wrapper.sh @ 27:b539aeb75980 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 28 Feb 2017 08:10:34 -0500 |
| parents | 28fbbdfd7a87 |
| children | 7c33029fd63d |
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| 26:28fbbdfd7a87 | 27:b539aeb75980 |
|---|---|
| 323 echo "</tbody></table>" >> $outputFile | 323 echo "</tbody></table>" >> $outputFile |
| 324 | 324 |
| 325 echo "<table class='pure-table pure-table-striped' id='junction_table'> <caption>Unproductive median</caption><thead><tr><th>Donor</th><th>Number of sequences</th><th>V.DEL</th><th>P1</th><th>N</th><th>P2</th><th>DEL.J</th><th>Total.Del</th><th>Total.N</th><th>Total.P</th><th>Median.CDR3</th><thead></tr><tbody>" >> $outputFile | 325 echo "<table class='pure-table pure-table-striped' id='junction_table'> <caption>Unproductive median</caption><thead><tr><th>Donor</th><th>Number of sequences</th><th>V.DEL</th><th>P1</th><th>N</th><th>P2</th><th>DEL.J</th><th>Total.Del</th><th>Total.N</th><th>Total.P</th><th>Median.CDR3</th><thead></tr><tbody>" >> $outputFile |
| 326 while read Sample unique VDEL P1 N1 P2 DELJ TotalDel TotalN TotalP median | 326 while read Sample unique VDEL P1 N1 P2 DELJ TotalDel TotalN TotalP median |
| 327 do | 327 do |
| 328 echo "<tr><td>$Sample</td><td>$unique</td><td>$VDEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DELJ</td><td>$TotalDel</td><td>$TotalN</td><td>$TotalP</td><td>-/td></tr>" >> $outputFile | 328 echo "<tr><td>$Sample</td><td>$unique</td><td>$VDEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DELJ</td><td>$TotalDel</td><td>$TotalN</td><td>$TotalP</td><td>-</td></tr>" >> $outputFile |
| 329 done < $outputDir/junctionAnalysisUnProd_median_nD.txt | 329 done < $outputDir/junctionAnalysisUnProd_median_nD.txt |
| 330 echo "</tbody></table>" >> $outputFile | 330 echo "</tbody></table>" >> $outputFile |
| 331 | 331 |
| 332 cat $dir/naive_junction.htm >> $outputFile | 332 cat $dir/naive_junction.htm >> $outputFile |
| 333 | 333 |