diff report_clonality/r_wrapper.sh @ 27:b539aeb75980 draft

Uploaded

--- a/report_clonality/r_wrapper.sh	Mon Feb 13 09:08:46 2017 -0500
+++ b/report_clonality/r_wrapper.sh	Tue Feb 28 08:10:34 2017 -0500
@@ -325,7 +325,7 @@
 	echo "<table class='pure-table pure-table-striped' id='junction_table'> <caption>Unproductive median</caption><thead><tr><th>Donor</th><th>Number of sequences</th><th>V.DEL</th><th>P1</th><th>N</th><th>P2</th><th>DEL.J</th><th>Total.Del</th><th>Total.N</th><th>Total.P</th><th>Median.CDR3</th><thead></tr><tbody>" >> $outputFile
 	while read Sample unique VDEL P1 N1 P2 DELJ TotalDel TotalN TotalP median
 	do
-		echo "<tr><td>$Sample</td><td>$unique</td><td>$VDEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DELJ</td><td>$TotalDel</td><td>$TotalN</td><td>$TotalP</td><td>-/td></tr>" >> $outputFile
+		echo "<tr><td>$Sample</td><td>$unique</td><td>$VDEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DELJ</td><td>$TotalDel</td><td>$TotalN</td><td>$TotalP</td><td>-</td></tr>" >> $outputFile
 	done < $outputDir/junctionAnalysisUnProd_median_nD.txt
 	echo "</tbody></table>" >> $outputFile