Mercurial > repos > davidvanzessen > argalaxy_tools
diff report_clonality/naive_cdr3_char.htm @ 52:124b7fd92a3e draft
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author | davidvanzessen |
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date | Thu, 25 Feb 2021 13:36:15 +0000 |
parents | 4d2a8f98a502 |
children | 81b3eb11ed2c |
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--- a/report_clonality/naive_cdr3_char.htm Thu Aug 08 07:40:36 2019 -0400 +++ b/report_clonality/naive_cdr3_char.htm Thu Feb 25 13:36:15 2021 +0000 @@ -1,101 +1,101 @@ -<html> - -<head> -<meta http-equiv=Content-Type content="text/html; charset=windows-1252"> -<meta name=Generator content="Microsoft Word 14 (filtered)"> -<style> -<!-- - /* Font Definitions */ - @font-face - {font-family:Calibri; - panose-1:2 15 5 2 2 2 4 3 2 4;} - /* Style Definitions */ - p.MsoNormal, li.MsoNormal, div.MsoNormal - {margin-top:0in; - margin-right:0in; - margin-bottom:10.0pt; - margin-left:0in; - line-height:115%; - font-size:11.0pt; - font-family:"Calibri","sans-serif";} -.MsoChpDefault - {font-family:"Calibri","sans-serif";} -.MsoPapDefault - {margin-bottom:10.0pt; - line-height:115%;} -@page WordSection1 - {size:8.5in 11.0in; - margin:1.0in 1.0in 1.0in 1.0in;} -div.WordSection1 - {page:WordSection1;} -p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing - {mso-style-priority:1; - mso-style-unhide:no; - mso-style-qformat:yes; - margin:0in; - margin-bottom:.0001pt; - mso-pagination:widow-orphan; - font-size:11.0pt; - font-family:"Calibri","sans-serif"; - mso-fareast-font-family:"Times New Roman"; - mso-fareast-theme-font:minor-fareast; - mso-bidi-font-family:"Times New Roman";} ---> -</style> - -</head> - -<body lang=EN-US> - -<div class=WordSection1> - -<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p> - -<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>This tab gives information on the -different characteristics of the CDR3.</span></p> - -<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: -12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p> - -<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p> - -<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><span style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>Graph visualizing for each donor the -distribution of the CDR3 length in amino acids between all sequences.</span></p> - -<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p> - -<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how -frequent each amino acid is used in the CDR3 of all sequences. The red colour -in the background indicate positively charged amino acids, and the blue colour -in the background indicate negatively charged amino acids. The amino acids are -ordered from hydrophilic (left) to hydrophobic (right). </span></p> - -<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: -12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p> - -<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; -text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; -font-family:"Times New Roman","serif"'>Table showing for each donor the median -CDR3 length.</span></p> - -<p class=MsoNormal><span lang=EN-GB> </span></p> - -</div> - -</body> - -</html> +<html> + +<head> +<meta http-equiv=Content-Type content="text/html; charset=windows-1252"> +<meta name=Generator content="Microsoft Word 14 (filtered)"> +<style> +<!-- + /* Font Definitions */ + @font-face + {font-family:Calibri; + panose-1:2 15 5 2 2 2 4 3 2 4;} + /* Style Definitions */ + p.MsoNormal, li.MsoNormal, div.MsoNormal + {margin-top:0in; + margin-right:0in; + margin-bottom:10.0pt; + margin-left:0in; + line-height:115%; + font-size:11.0pt; + font-family:"Calibri","sans-serif";} +.MsoChpDefault + {font-family:"Calibri","sans-serif";} +.MsoPapDefault + {margin-bottom:10.0pt; + line-height:115%;} +@page WordSection1 + {size:8.5in 11.0in; + margin:1.0in 1.0in 1.0in 1.0in;} +div.WordSection1 + {page:WordSection1;} +p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing + {mso-style-priority:1; + mso-style-unhide:no; + mso-style-qformat:yes; + margin:0in; + margin-bottom:.0001pt; + mso-pagination:widow-orphan; + font-size:11.0pt; + font-family:"Calibri","sans-serif"; + mso-fareast-font-family:"Times New Roman"; + mso-fareast-theme-font:minor-fareast; + mso-bidi-font-family:"Times New Roman";} +--> +</style> + +</head> + +<body lang=EN-US> + +<div class=WordSection1> + +<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p> + +<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>This tab gives information on the +different characteristics of the CDR3.</span></p> + +<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: +12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p> + +<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p> + +<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><span style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>Graph visualizing for each donor the +distribution of the CDR3 length in amino acids between all sequences.</span></p> + +<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p> + +<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how +frequent each amino acid is used in the CDR3 of all sequences. The red colour +in the background indicate positively charged amino acids, and the blue colour +in the background indicate negatively charged amino acids. The amino acids are +ordered from hydrophilic (left) to hydrophobic (right). </span></p> + +<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: +12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p> + +<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; +text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; +font-family:"Times New Roman","serif"'>Table showing for each donor the median +CDR3 length.</span></p> + +<p class=MsoNormal><span lang=EN-GB> </span></p> + +</div> + +</body> + +</html>