Mercurial > repos > davidvanzessen > argalaxy_tools
diff imgt_loader/imgt_loader.r @ 31:3a76faa53c59 draft
Uploaded
author | davidvanzessen |
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date | Tue, 14 Mar 2017 06:51:38 -0400 |
parents | 798b62942b4b |
children | bad6a9a53ae7 |
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--- a/imgt_loader/imgt_loader.r Thu Mar 09 10:48:14 2017 -0500 +++ b/imgt_loader/imgt_loader.r Tue Mar 14 06:51:38 2017 -0400 @@ -31,10 +31,12 @@ out[,"CDR2.Seq"] = aa[,"CDR2.IMGT"] out[,"CDR2.Length"] = summ[,"CDR2.IMGT.length"] -out[,"CDR3.Seq"] = aa[,"CDR3.IMGT"] +out[,"CDR3.Seq"] = gapped.aa[,"CDR3.IMGT"] out[,"CDR3.Length"] = summ[,"CDR3.IMGT.length"] -out[,"CDR3.Seq.DNA"] = gapped.aa[,"CDR3.IMGT"] +out[,"CDR3.IMGT"] = out[,"CDR3.Seq"] + +out[,"CDR3.Seq.DNA"] = sequences[,"CDR3.IMGT"] out[,"CDR3.Length.DNA"] = nchar(as.character(out[,"CDR3.Seq.DNA"])) out[,"Strand"] = summ[,"Orientation"] out[,"CDR3.Found.How"] = "a"