Mercurial > repos > davidvanzessen > argalaxy_tools

changeset 31:3a76faa53c59 draft

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Uploaded
author davidvanzessen
date Tue, 14 Mar 2017 06:51:38 -0400
parents b50965edac24
children 7c33029fd63d
files imgt_loader/imgt_loader.r report_clonality/circos/fonts.conf~ report_clonality/circos/housekeeping.conf~
diffstat 2 files changed, 4 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/imgt_loader/imgt_loader.r	Thu Mar 09 10:48:14 2017 -0500
+++ b/imgt_loader/imgt_loader.r	Tue Mar 14 06:51:38 2017 -0400
@@ -31,10 +31,12 @@
 out[,"CDR2.Seq"] = aa[,"CDR2.IMGT"]
 out[,"CDR2.Length"] = summ[,"CDR2.IMGT.length"]
 
-out[,"CDR3.Seq"] = aa[,"CDR3.IMGT"]
+out[,"CDR3.Seq"] = gapped.aa[,"CDR3.IMGT"]
 out[,"CDR3.Length"] = summ[,"CDR3.IMGT.length"]
 
-out[,"CDR3.Seq.DNA"] = gapped.aa[,"CDR3.IMGT"]
+out[,"CDR3.IMGT"] = out[,"CDR3.Seq"]
+
+out[,"CDR3.Seq.DNA"] = sequences[,"CDR3.IMGT"]
 out[,"CDR3.Length.DNA"] = nchar(as.character(out[,"CDR3.Seq.DNA"]))
 out[,"Strand"] = summ[,"Orientation"]
 out[,"CDR3.Found.How"] = "a"
--- a/report_clonality/circos/fonts.conf~	Thu Mar 09 10:48:14 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,8 +0,0 @@
-
-default       = LTe50046.ttf
-normal        = LTe50046.ttf
-bold          = LTe50048.ttf
-condensed     = LTe50050.ttf
-condensedbold = LTe50054.ttf
-mono          = pragmata.ttf
-glyph         = wingding.ttf