Mercurial > repos > davidvanzessen > argalaxy_tools
changeset 42:9a47d7a552d6 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Thu, 26 Oct 2017 09:08:37 -0400 |
| parents | a70dbcfa5d8a |
| children | 2325074a8461 |
| files | report_clonality/RScript.r tool_dependencies.xml |
| diffstat | 2 files changed, 2 insertions(+), 36 deletions(-) [+] |
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--- a/report_clonality/RScript.r Thu Jul 06 09:07:52 2017 -0400 +++ b/report_clonality/RScript.r Thu Oct 26 09:08:37 2017 -0400 @@ -49,6 +49,8 @@ inputdata = read.table(infile, sep="\t", header=TRUE, fill=T, comment.char="", stringsAsFactors=F) +inputdata$Sample = as.character(inputdata$Sample) + print(paste("nrows: ", nrow(inputdata)))
--- a/tool_dependencies.xml Thu Jul 06 09:07:52 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,36 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="igblastwrp" version="0.6"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://github.com/mikessh/higblast/releases/download/v0.6/igblastwrapper_linux64.tar.gz</action> - <action type="move_file"> - <source>bin</source> - <destination>$INSTALL_DIR/</destination> - </action> - <action type="move_file"> - <source>data</source> - <destination>$INSTALL_DIR/</destination> - </action> - <action type="move_file"> - <source>igblastwrp.jar</source> - <destination>$INSTALL_DIR/</destination> - </action> - <action type="set_environment"> - <environment_variable action="set_to" name="IGBLASTWRP">$INSTALL_DIR/</environment_variable> - </action> - </actions> - </install> - <readme> -Downloads https://github.com/mikessh/higblast/ - </readme> - </package> - <package name="weblogo" version="3.3"> - <repository changeset_revision="648e4b32f15c" name="package_weblogo_3_3" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <!-- - <package name="circostools" version="0.20"> - <repository name="package_circostools_0_20" owner="iuc" /> - </package> - --> -</tool_dependency>