Mercurial > repos > davidvanzessen > mutation_analysis

diff tool_dependencies.xml @ 0:8a5a2abbb870 draft default tip

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author davidvanzessen
date Mon, 29 Aug 2016 05:36:10 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 29 05:36:10 2016 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<set_environment version="1.0">            
+  </set_environment>
+    
+	<package name="blastn" version="1.0"> 
+        <install version="1.0">
+            <actions>
+				<action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action>
+				<action type="move_file">
+					<source>bin/blastn</source>
+					<destination>$INSTALL_DIR</destination>
+				</action>
+				<action type="set_environment">
+					<environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable>
+				</action>
+            </actions>
+        </install>
+        <readme>
+					downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable
+        </readme>
+    </package>
+</tool_dependency>
+