annotate tool_dependencies.xml @ 0:8a5a2abbb870 draft default tip

Uploaded
author davidvanzessen
date Mon, 29 Aug 2016 05:36:10 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
1 <?xml version="1.0"?>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
2 <tool_dependency>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
3 <set_environment version="1.0">
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
4 </set_environment>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
5
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
6 <package name="blastn" version="1.0">
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
7 <install version="1.0">
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
8 <actions>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
10 <action type="move_file">
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
11 <source>bin/blastn</source>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
12 <destination>$INSTALL_DIR</destination>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
13 </action>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
14 <action type="set_environment">
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
15 <environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
16 </action>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
17 </actions>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
18 </install>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
19 <readme>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
20 downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
21 </readme>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
22 </package>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
23 </tool_dependency>
8a5a2abbb870 Uploaded
davidvanzessen
parents:
diff changeset
24