Mercurial > repos > davidvanzessen > shm_csr

changeset 97:fbc6307dd83b draft

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planemo upload commit 91fd26f19cb20fc2ee4d87d7edbc9ce6099752b0
author rhpvorderman
date Mon, 08 Jan 2024 08:50:07 +0000
parents 385dea3c6cb5
children d714f5ea83d7
files CHANGELOG.md CONTROL_NWK377_PB_IGHC_MID1_40nt_2.txz a.out shm_csr.xml show_time_as_float tests/__pycache__/test_shm_csr.cpython-37-pytest-6.2.5.pyc tests/__pycache__/test_shm_csr.cpython-39-pytest-7.2.1.pyc tests/__pycache__/test_shm_csr.cpython-39-pytest-7.4.4.pyc tests/data/.~lock.handleiding activeren pas.docx# tests/data/handleiding activeren pas.docx time_ns wget-log
diffstat 12 files changed, 8 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/CHANGELOG.md	Fri Jan 05 08:53:22 2024 +0000
+++ b/CHANGELOG.md	Mon Jan 08 08:50:07 2024 +0000
@@ -1,3 +1,7 @@
+version 1.9.1
+-----------------
++ Fix error in launch command.
+
 version 1.9.0
 -----------------
 + Add a no filter region filter. 
Binary file CONTROL_NWK377_PB_IGHC_MID1_40nt_2.txz has changed
Binary file a.out has changed
--- a/shm_csr.xml	Fri Jan 05 08:53:22 2024 +0000
+++ b/shm_csr.xml	Mon Jan 08 08:50:07 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.9.0" profile="16.04">
+<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.9.1" profile="16.04">
 	<description></description>
 	<requirements>
 		<requirement type="package" version="3.7.1">python</requirement>
@@ -37,8 +37,8 @@
 			$empty_region_filter
 			$fast
 		#else:
-			$__tool_directory__/wrapper.sh
-			"$input" custom
+			$__tool_directory__/wrapper.sh "$in_file"
+			custom
 			$out_file $out_file.files_path
 			"${in_file.name}" "-" $functionality $unique
 			$naive_output_cond.naive_output $naive_output_ca $naive_output_cg
Binary file show_time_as_float has changed
Binary file tests/__pycache__/test_shm_csr.cpython-37-pytest-6.2.5.pyc has changed
Binary file tests/__pycache__/test_shm_csr.cpython-39-pytest-7.2.1.pyc has changed
Binary file tests/__pycache__/test_shm_csr.cpython-39-pytest-7.4.4.pyc has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tests/data/.~lock.handleiding activeren pas.docx#	Mon Jan 08 08:50:07 2024 +0000
@@ -0,0 +1,1 @@
+Vorderman\, R.H.P. (MOLEPI) ,rhpvorderman,sasc-pc-6,21.02.2023 15:01,file:///home/rhpvorderman/.config/libreoffice/4;
\ No newline at end of file
Binary file tests/data/handleiding activeren pas.docx has changed
Binary file time_ns has changed
--- a/wget-log	Fri Jan 05 08:53:22 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,15 +0,0 @@
---2024-01-03 14:15:48--  https://filesender.surf.nl/download.php?token=e17473dc-a342-4bfc-b1ff-5bc3b5fb8bd8
-Herleiden van filesender.surf.nl (filesender.surf.nl)... 2001:610:188:f001:145:101:124:6, 145.101.124.6
-Verbinding maken met filesender.surf.nl (filesender.surf.nl)|2001:610:188:f001:145:101:124:6|:443... verbonden.
-HTTP-verzoek is verzonden; wachten op antwoord... 302 Found
-Locatie: /?s=exception&exception=eyJtZXNzYWdlIjoiZG93bmxvYWRfbWlzc2luZ19maWxlc19pZHMiLCJ1aWQiOiI2NTk1NWUwNDI2NmFiIiwiZGV0YWlscyI6bnVsbH0= [volgen...]
---2024-01-03 14:15:48--  https://filesender.surf.nl/?s=exception&exception=eyJtZXNzYWdlIjoiZG93bmxvYWRfbWlzc2luZ19maWxlc19pZHMiLCJ1aWQiOiI2NTk1NWUwNDI2NmFiIiwiZGV0YWlscyI6bnVsbH0=
-Verbinding met [filesender.surf.nl]:443 wordt hergebruikt.
-HTTP-verzoek is verzonden; wachten op antwoord... 200 OK
-Lengte: 5324 (5,2K) [text/html]
-Wordt opgeslagen als: ‘/home/rhpvorderman/Downloads/tmp/test.tar.xz’
-
-
/home/rhpvorderman/Downloads/tmp/test.tar.xz                0%[                                                                                                                                      ]       0  --.-KB/s               
/home/rhpvorderman/Downloads/tmp/test.tar.xz              100%[=====================================================================================================================================>]   5,20K  --.-KB/s    in 0s      
-
-2024-01-03 14:15:48 (414 MB/s) - '‘/home/rhpvorderman/Downloads/tmp/test.tar.xz’' opgeslagen [5324/5324]
-