Mercurial > repos > dawe > srf2fastq
annotate srf2fastq/io_lib-1.12.2/io_lib/seqIOCTF.c @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | dawe |
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date | Tue, 07 Jun 2011 17:48:05 -0400 |
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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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1 /* |
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2 * Title: seqIOCTF |
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3 * |
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4 * File: seqIOCTF.c |
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5 * Purpose: Reading/writing of CTF sequences |
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6 * Last update: March 2000 |
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7 * |
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8 * Change log: |
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9 * Created mieg, march 2000, importing code from wabi/ctftrace.c |
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10 */ |
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11 |
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12 |
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13 /* ---- Imports ---- */ |
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14 |
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15 #include <stdio.h> |
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16 #include <stdlib.h> |
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17 #include <ctype.h> |
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18 #include <string.h> |
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19 |
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20 #include "io_lib/Read.h" |
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21 #include "io_lib/seqIOCTF.h" |
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22 #include "io_lib/abi.h" |
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23 #include "io_lib/mach-io.h" |
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24 #include "io_lib/xalloc.h" |
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25 #include "io_lib/stdio_hack.h" |
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26 |
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27 /* ---- Constants ---- */ |
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28 |
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29 /* |
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30 * Read the CTF format sequence from FILE *fp into a Read structure. |
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31 |
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32 * Returns: |
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33 * Read * - Success, the Read structure read. |
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34 * NULLRead - Failure. |
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35 */ |
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36 Read *fread_ctf (FILE *fp) { |
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37 Read *read = ctfFRead (fp) ; |
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38 |
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39 return read ; |
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40 } |
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41 |
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42 /* |
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43 * Read the CTF format sequence from file 'fn' into a Read structure. |
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44 */ |
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45 |
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46 Read *read_ctf (char *fn) { |
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47 Read *read; |
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48 FILE *fp; |
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49 |
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50 /* Open file */ |
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51 if ((fp = fopen(fn, "rb")) == NULL) |
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52 return NULLRead; |
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53 |
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54 read = fread_ctf(fp); |
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55 fclose(fp); |
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56 |
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57 if (read && (read->trace_name = (char *)xmalloc(strlen(fn)+1))) |
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58 strcpy(read->trace_name, fn); |
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59 |
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60 return read; |
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61 } |
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62 |
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63 |
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64 /* |
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65 * Write to an CTF file - unsupported. |
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66 */ |
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67 /* ARGSUSED */ |
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68 int fwrite_ctf (FILE *fp, Read *read) { |
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69 return ctfFWrite (fp, read) ; |
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70 } |
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71 |
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72 /* |
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73 * Write to an CTF file |
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74 */ |
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75 /* ARGSUSED */ |
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76 int write_ctf(char *fn, Read *read) { |
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77 FILE *fp; |
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78 |
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79 /* Open file */ |
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80 if ((fp = fopen(fn, "wb")) == NULL) |
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81 return -1 ; |
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82 |
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83 fwrite_ctf (fp, read) ; |
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84 fclose(fp); |
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85 |
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86 return 0 ; |
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87 } |
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88 |