Mercurial > repos > dawe > srf2fastq
annotate srf2fastq/io_lib-1.12.2/progs/hash_extract.c @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | dawe |
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date | Tue, 07 Jun 2011 17:48:05 -0400 |
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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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1 #include <stdio.h> |
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2 #include <string.h> |
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3 #include <stdlib.h> |
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4 #include <fcntl.h> |
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5 #include <io_lib/hash_table.h> |
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6 |
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7 /* |
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8 * Copies a single named file to stdout. |
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9 * Returns 0 on success |
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10 * 1 on failure |
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11 */ |
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12 int extract(HashFile *hf, char *file) { |
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13 size_t len; |
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14 char *data; |
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15 |
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16 if (data = HashFileExtract(hf, file, &len)) { |
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17 fwrite(data, len, 1, stdout); |
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18 free(data); |
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19 return 0; |
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20 } |
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21 return 1; |
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22 } |
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23 |
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24 int main(int argc, char **argv) { |
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25 char *fofn = NULL; |
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26 char *hash; |
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27 HashFile *hf; |
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28 int ret = 0; |
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29 |
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30 /* process command line arguments of the form -arg */ |
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31 for (argc--, argv++; argc > 0; argc--, argv++) { |
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32 if (**argv != '-' || strcmp(*argv, "--") == 0) |
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33 break; |
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34 |
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35 if (strcmp(*argv, "-I") == 0) { |
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36 argv++; |
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37 fofn = *argv; |
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38 argc--; |
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39 } |
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40 } |
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41 |
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42 if (argc < 2 && !fofn) { |
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43 fprintf(stderr, "Usage: hash_extract [-I fofn] hashfile [name ...]\n"); |
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44 return 1; |
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45 } |
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46 hash = argv[0]; |
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47 argc--; |
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48 argv++; |
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49 |
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50 if (NULL == (hf = HashFileOpen(hash))) { |
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51 perror(hash); |
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52 return 1; |
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53 } |
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54 |
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55 if (fofn) { |
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56 FILE *fofnfp; |
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57 char file[256]; |
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58 |
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59 if (strcmp(fofn, "-") == 0) { |
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60 fofnfp = stdin; |
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61 } else { |
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62 if (NULL == (fofnfp = fopen(fofn, "r"))) { |
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63 perror(fofn); |
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64 return 1; |
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65 } |
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66 } |
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67 |
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68 while (fgets(file, 255, fofnfp)) { |
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69 char *c; |
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70 if (c = strchr(file, '\n')) |
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71 *c = 0; |
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72 |
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73 ret |= extract(hf, file); |
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74 } |
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75 |
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76 fclose(fofnfp); |
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77 } |
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78 |
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79 #ifdef _WIN32 |
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80 _setmode(_fileno(stdout), _O_BINARY); |
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81 #endif |
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82 for (; argc; argc--, argv++) { |
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83 ret |= extract(hf, *argv); |
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84 } |
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85 |
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86 HashFileDestroy(hf); |
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87 |
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88 return ret; |
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89 } |