Mercurial > repos > dawe > srf2fastq
annotate srf2fastq/io_lib-1.12.2/progs/index_tar.c @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | dawe |
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date | Tue, 07 Jun 2011 17:48:05 -0400 |
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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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1 #include <stdio.h> |
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2 #include <string.h> |
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3 #include <errno.h> |
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4 #include <stdlib.h> |
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5 #include <io_lib/tar_format.h> |
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6 |
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7 int main(int argc, char **argv) { |
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8 int directories = 0; |
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9 FILE *fp; |
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10 tar_block blk; |
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11 char member[256]; |
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12 size_t size, extra; |
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13 int LongLink = 0; |
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14 size_t offset = 0; |
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15 |
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16 /* process command line arguments of the form -arg */ |
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17 for (argc--, argv++; argc > 0; argc--, argv++) { |
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18 if (**argv != '-' || strcmp(*argv, "--") == 0) |
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19 break; |
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20 |
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21 if (strcmp(*argv, "-d") == 0) |
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22 directories = 1; |
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23 } |
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24 |
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25 if (argc != 1) { |
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26 fprintf(stderr, "Usage: index_tar [-d] tarfile > tarfile.index\n"); |
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27 return 1; |
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28 } |
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29 |
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30 /* open the tarfile */ |
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31 if (NULL == (fp = fopen(argv[0], "rb"))) { |
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32 perror(argv[0]); |
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33 return 1; |
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34 } |
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35 |
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36 while(fread(&blk, sizeof(blk), 1, fp) == 1) { |
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37 /* |
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38 * If a directory is too large to fit in the name (>100) but short |
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39 * enough to fit in the prefix the name field will be empty, this is |
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40 * not the case for ordinary files where the name field is always |
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41 * non-empty |
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42 */ |
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43 if (!blk.header.name[0] && !blk.header.prefix[0]) |
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44 break; |
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45 |
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46 /* get size of member, rounded to a multiple of TBLOCK */ |
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47 size = strtoul(blk.header.size, NULL, 8); |
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48 extra = TBLOCK*((size+TBLOCK-1)/TBLOCK) - size; |
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49 |
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50 /* skip directories unless requested */ |
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51 if (directories || blk.header.typeflag != DIRTYPE || LongLink) { |
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52 |
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53 /* |
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54 * extract member name (prefix + name), unless last member |
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55 * was ././@LongLink |
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56 */ |
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57 if (LongLink == 0) { |
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58 (void) strncpy(member, blk.header.prefix, 155); |
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59 if (strlen(blk.header.prefix) > 0 && blk.header.name[0]) |
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60 (void) strcat(member, "/"); |
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61 (void) strncat(member, blk.header.name, 100); |
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62 } |
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63 |
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64 /* account for gtar ././@LongLink */ |
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65 if (strcmp(member, "././@LongLink") == 0) { |
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66 /* still expect filenames to fit into 256 bytes */ |
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67 if (size > 256) { |
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68 fread(member, 1, size > 256 ? 256 : size, fp); |
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69 fprintf(stderr,"././@LongLink too long size=%ld\n", |
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70 (long)size); |
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71 fprintf(stderr,"%s...\n", member); |
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72 exit(1); |
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73 } |
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74 /* |
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75 * extract full name of next member then rewind to start |
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76 * of header |
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77 */ |
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78 fread(member, 1, size > 256 ? 256 : size, fp); |
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79 fseek(fp, -size, SEEK_CUR); |
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80 LongLink = 1; |
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81 } else { |
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82 /* output offset, member name */ |
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83 printf("%lu %.256s\n", (long)offset, member); |
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84 LongLink = 0; |
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85 } |
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86 } |
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87 |
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88 /* increment offset */ |
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89 size += extra; |
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90 fseek(fp, size, SEEK_CUR); |
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91 offset += sizeof(blk) + size; |
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92 } |
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93 |
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94 fclose(fp); |
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95 return 0; |
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96 } |