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annotate srf2fastq/io_lib-1.12.2/tests/srf_filter.test @ 0:d901c9f41a6a default tip

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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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1 #!/bin/sh
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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3 # Filter out raw data from both.srf and we should get something similar to
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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4 # proc.srf. Hard to verify this fully.
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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5 $top_builddir/progs/srf_filter -m PROC $srcdir/data/both.srf $outdir/f_proc.srf
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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6 $top_builddir/progs/srf_dump_all $srcdir/data/proc.srf > $outdir/proc.dump
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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7 $top_builddir/progs/srf_dump_all $outdir/f_proc.srf > $outdir/f_proc.dump
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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8 cmp $outdir/proc.dump $outdir/f_proc.dump || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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10 # Also check with srf_info to see that we have the expected number of
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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11 # ZTR chunks
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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12 $top_builddir/progs/srf_info $srcdir/data/proc.srf|tail -n +2|grep -v 'null index' > $outdir/proc.info
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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13 $top_builddir/progs/srf_info $outdir/f_proc.srf|tail -n +2|grep -v 'null index' > $outdir/f_proc.info
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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14 cmp $outdir/proc.info $outdir/f_proc.info || exit 1