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annotate srf2fastq/io_lib-1.12.2/tests/srf2fastq.test @ 0:d901c9f41a6a default tip

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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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1 #!/bin/sh
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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2 $top_builddir/progs/srf2fastq $srcdir/data/proc.srf > $outdir/slx.fastq
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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3 cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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diff changeset
4 $top_builddir/progs/srf2fastq -C $srcdir/data/proc.srf > $outdir/slx.fastq
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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diff changeset
5 cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
6
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
7 $top_builddir/progs/srf2fastq $srcdir/data/raw.srf > $outdir/slx.fastq
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
8 cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
9 $top_builddir/progs/srf2fastq -C $srcdir/data/raw.srf > $outdir/slx.fastq
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
10 cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
11
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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diff changeset
12 $top_builddir/progs/srf2fastq $srcdir/data/both.srf > $outdir/slx.fastq
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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diff changeset
13 cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
14 $top_builddir/progs/srf2fastq -C $srcdir/data/both.srf > $outdir/slx.fastq
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
parents:
diff changeset
15 cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1