Mercurial > repos > dawe > srf2fastq

diff srf2fastq/io_lib-1.12.2/tests/srf2fastq.test @ 0:d901c9f41a6a default tip

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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/srf2fastq/io_lib-1.12.2/tests/srf2fastq.test	Tue Jun 07 17:48:05 2011 -0400
@@ -0,0 +1,15 @@
+#!/bin/sh
+$top_builddir/progs/srf2fastq $srcdir/data/proc.srf > $outdir/slx.fastq
+cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
+$top_builddir/progs/srf2fastq -C $srcdir/data/proc.srf > $outdir/slx.fastq
+cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1
+
+$top_builddir/progs/srf2fastq $srcdir/data/raw.srf > $outdir/slx.fastq
+cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
+$top_builddir/progs/srf2fastq -C $srcdir/data/raw.srf > $outdir/slx.fastq
+cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1
+
+$top_builddir/progs/srf2fastq $srcdir/data/both.srf > $outdir/slx.fastq
+cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
+$top_builddir/progs/srf2fastq -C $srcdir/data/both.srf > $outdir/slx.fastq
+cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1