diff srf2fastq/io_lib-1.12.2/io_lib/traceType.h @ 0:d901c9f41a6a default tip

Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/srf2fastq/io_lib-1.12.2/io_lib/traceType.h	Tue Jun 07 17:48:05 2011 -0400
@@ -0,0 +1,84 @@
+/*
+ * Copyright (c) Medical Research Council 1994. All rights reserved.
+ *
+ * Permission to use, copy, modify and distribute this software and its
+ * documentation for any purpose is hereby granted without fee, provided that
+ * this copyright and notice appears in all copies.
+ *
+ * This file was written by James Bonfield, Simon Dear, Rodger Staden,
+ * as part of the Staden Package at the MRC Laboratory of Molecular
+ * Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
+ *
+ * MRC disclaims all warranties with regard to this software.
+ */
+
+#ifndef _traceType_h
+#define _traceType_h
+
+/*
+ * Title:       traceType.h
+ * 
+ * File:        traceType.h
+ * Purpose:     determining traceType of traces
+ * Last update: Tue Jan 15 1991
+ *
+ * Change log :-
+ */
+
+/* ---- Imports ---- */
+
+#include <stdio.h>      /* IMPORT: fopen, fclose, fseek, ftell, fgetc */
+#include <ctype.h>      
+#include <string.h>     /* IMPORT: isprint*/
+
+#include "io_lib/Read.h"	/* IMPORT: TT_xxx defines */
+#include "io_lib/mFILE.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*
+ * Determine the trace type for file 'fn'.
+ *
+ * Returns:
+ *     TT_SCF, TT_ABI, TT_ALF, or TT_PLN for success.
+ *     TT_UNK for unknown type.
+ *     TT_ERR for error.
+ */
+extern int determine_trace_type(char *fn);
+
+/*
+ * Determine the trace type for FILE * 'fp'.
+ *
+ * Returns:
+ *     TT_SCF, TT_ABI, TT_ALF, or TT_PLN for success.
+ *     TT_UNK for unknown type.
+ *     TT_ERR for error.
+ */
+extern int fdetermine_trace_type(mFILE *fp);
+
+/*
+ * Returns a statically declared string containing a 3 character
+ * identifier for this trace type.
+ * "ERR" represents error, and "UNK" for unknown.
+ * Successful values are "SCF", "ABI", "ALF" and "PLN".
+ */
+extern char *trace_type_str(char *traceName);
+
+/*
+ * Converts a trace type string to an integer.
+ */
+extern int trace_type_str2int(char *str);
+
+/*
+ * Converts a trace type integer to a string.
+ */
+char *trace_type_int2str(int type);
+
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /*_traceType_h*/