Mercurial > repos > dawe > srf2fastq
annotate srf2fastq/io_lib-1.12.2/io_lib/traceType.h @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | dawe |
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date | Tue, 07 Jun 2011 17:48:05 -0400 |
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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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1 /* |
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2 * Copyright (c) Medical Research Council 1994. All rights reserved. |
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3 * |
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4 * Permission to use, copy, modify and distribute this software and its |
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5 * documentation for any purpose is hereby granted without fee, provided that |
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6 * this copyright and notice appears in all copies. |
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7 * |
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8 * This file was written by James Bonfield, Simon Dear, Rodger Staden, |
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9 * as part of the Staden Package at the MRC Laboratory of Molecular |
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10 * Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. |
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11 * |
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12 * MRC disclaims all warranties with regard to this software. |
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13 */ |
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14 |
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15 #ifndef _traceType_h |
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16 #define _traceType_h |
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17 |
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18 /* |
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19 * Title: traceType.h |
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20 * |
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21 * File: traceType.h |
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22 * Purpose: determining traceType of traces |
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23 * Last update: Tue Jan 15 1991 |
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24 * |
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25 * Change log :- |
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26 */ |
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27 |
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28 /* ---- Imports ---- */ |
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29 |
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30 #include <stdio.h> /* IMPORT: fopen, fclose, fseek, ftell, fgetc */ |
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31 #include <ctype.h> |
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32 #include <string.h> /* IMPORT: isprint*/ |
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33 |
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34 #include "io_lib/Read.h" /* IMPORT: TT_xxx defines */ |
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35 #include "io_lib/mFILE.h" |
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36 |
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37 #ifdef __cplusplus |
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38 extern "C" { |
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39 #endif |
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40 |
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41 /* |
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42 * Determine the trace type for file 'fn'. |
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43 * |
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44 * Returns: |
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45 * TT_SCF, TT_ABI, TT_ALF, or TT_PLN for success. |
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46 * TT_UNK for unknown type. |
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47 * TT_ERR for error. |
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48 */ |
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49 extern int determine_trace_type(char *fn); |
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50 |
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51 /* |
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52 * Determine the trace type for FILE * 'fp'. |
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53 * |
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54 * Returns: |
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55 * TT_SCF, TT_ABI, TT_ALF, or TT_PLN for success. |
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56 * TT_UNK for unknown type. |
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57 * TT_ERR for error. |
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58 */ |
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59 extern int fdetermine_trace_type(mFILE *fp); |
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60 |
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61 /* |
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62 * Returns a statically declared string containing a 3 character |
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63 * identifier for this trace type. |
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64 * "ERR" represents error, and "UNK" for unknown. |
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65 * Successful values are "SCF", "ABI", "ALF" and "PLN". |
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66 */ |
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67 extern char *trace_type_str(char *traceName); |
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68 |
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69 /* |
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70 * Converts a trace type string to an integer. |
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71 */ |
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72 extern int trace_type_str2int(char *str); |
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73 |
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74 /* |
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75 * Converts a trace type integer to a string. |
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76 */ |
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77 char *trace_type_int2str(int type); |
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78 |
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79 |
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80 #ifdef __cplusplus |
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81 } |
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82 #endif |
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83 |
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84 #endif /*_traceType_h*/ |