diff srf2fastq/io_lib-1.12.2/progs/scf_info.c @ 0:d901c9f41a6a default tip

Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/srf2fastq/io_lib-1.12.2/progs/scf_info.c	Tue Jun 07 17:48:05 2011 -0400
@@ -0,0 +1,48 @@
+/*
+ * Copyright (c) Medical Research Council 1994. All rights reserved.
+ *
+ * Permission to use, copy, modify and distribute this software and its
+ * documentation for any purpose is hereby granted without fee, provided that
+ * this copyright and notice appears in all copies.
+ *
+ * This file was written by James Bonfield, Simon Dear, Rodger Staden,
+ * as part of the Staden Package at the MRC Laboratory of Molecular
+ * Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
+ *
+ * MRC disclaims all warranties with regard to this software.
+ */
+
+#include <stdio.h>
+#include <io_lib/scf.h>
+
+int main(int argc, char **argv) {
+    Scf *scf;
+
+    if (argc != 2) {
+	fprintf(stderr, "Usage: scf_info scf_filename\n");
+	return 1;
+    }
+
+    scf = read_scf(argv[1]);
+
+    if (scf == NULL) {
+	fprintf(stderr, "read_scf failed\n");
+	return 1;
+    }
+
+    printf("Version_number       %.4s\n", scf->header.version);
+    printf("Number_of_samples    %d\n", scf->header.samples);
+    printf("Samples_offset       %d\n", scf->header.samples_offset);
+    printf("Samples_size         %d\n", scf->header.sample_size);
+    printf("Number_of_bases      %d\n", scf->header.bases);
+    printf("Bases_offset         %d\n", scf->header.bases_offset);
+    printf("Comments_size        %d\n", scf->header.comments_size);
+    printf("Comments_offset      %d\n", scf->header.comments_offset);
+    printf("Left_clip            %d\n", scf->header.bases_left_clip);
+    printf("Right_clip           %d\n", scf->header.bases_right_clip);
+    printf("Code set             %d\n", scf->header.code_set);
+
+    scf_deallocate(scf);
+
+    return 0;
+}