Mercurial > repos > dcouvin > pmlst_v2

diff pmlst/pmlst_db/config @ 0:cfab64885f66 draft default tip

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author dcouvin
date Mon, 06 Sep 2021 18:27:45 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pmlst/pmlst_db/config	Mon Sep 06 18:27:45 2021 +0000
@@ -0,0 +1,11 @@
+# Database configuration file - Describes the content of the database
+# Each db consist of 3 files with the following extensions: fsa, clpx, txt.clean
+# Other important files are: noGenes.txt
+#db_prefix	name	allele_lst
+incac	IncA/C PMLST	repA,parA,parB,A053
+incf	IncF RST	FII,FIC,FIIK,FIIS,FIIY,FIA,FIB
+inchi1	IncHI1 MLST	HCM1_043,HCM1_064,HCM1_099,HCM1_116,HCM1_178ac,HCM1_259
+inchi2	IncHI2 DLST	smr0018,smr0199
+inci1	IncI1 MLST	repI1,ardA,trbA,sogS,pilL
+incn	IncN MLST	repN,traJ,korA
+pbssb1-family	pBSSB1-family	higB,mqsA,soj