annotate resfinder/amr_abbreviations.md @ 0:55051a9bc58d draft default tip

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author dcouvin
date Mon, 10 Jan 2022 20:06:07 +0000
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1 # Antimicrobial Abbreviations
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2
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3 In ResFinder results where antimicrobial abbreviations are used, it will use the [EUCAST System for Antimicrobial Abbreviations](https://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Disk_test_documents/Disk_abbreviations/EUCAST_system_for_antimicrobial_abbreviations.pdf).
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4
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5 ## Abbreviations
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7 | Antimicrobial | Abbreviation |
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8 |-------------------------------|--------------|
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9 | Amikacin | AMI |
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10 | Amoxicillin | AMO |
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11 | Amoxicillin-clavulanate | AMC |
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12 | Ampicillin | AMP |
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13 | Ampicillin-sulbactam | AMS |
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14 | Avibactam | AVI |
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15 | Azithromycin | AZI |
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16 | Aztreonam | AZT |
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17 | Benzylpenicillin | BEN |
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18 | Cefaclor | CCL |
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19 | Cefadroxil | CDR |
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20 | Cefalexin | CLE |
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21 | Cefazolin | CZO |
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22 | Cefepime | CEP |
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23 | Cefixime | CIX |
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24 | Cefotaxime | CTA |
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25 | Cefoxitin | CXI |
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26 | Cefpodoxime | CPO |
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27 | Ceftaroline | CTL |
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28 | Ceftazidime | CTZ |
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29 | Ceftazidime-avibactam | CTV |
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30 | Ceftibuten | CTI |
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31 | Ceftiofur | CTF |
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32 | Ceftobiprole | CTO |
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33 | Ceftolozane-tazobactam | CTT |
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34 | Ceftriaxone | CTR |
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35 | Cefuroxime | CUR |
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36 | Chloramphenicol | CHL |
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37 | Ciprofloxacin | CIP |
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38 | Clarithromycin | CLA |
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39 | Clavulanic acid | CLV |
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40 | Clindamycin | CLI |
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41 | Cloxacillin | CLO |
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42 | Colistin | COL |
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43 | Dalbavancin | DAL |
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44 | Daptomycin | DAP |
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45 | Dicloxacillin | DIC |
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46 | Difloxacin | DIF |
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47 | Doripenem | DOR |
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48 | Doxycyline | DOX |
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49 | Enrofloxacin | ENR |
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50 | Ertapenem | ERT |
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51 | Erythromycin | ERY |
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52 | Florfenicol | FLO |
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53 | Flucloxacillin | FLU |
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54 | Fosfomycin | FOS |
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55 | Fusidic acid | FUS |
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56 | Gamithromycin | GAM |
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57 | Gentamicin | GEN |
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58 | Gepotidacin | GEP |
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59 | Imipenem | IMI |
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60 | Kanamycin | KAN |
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61 | Levofloxacin | LEV |
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62 | Linezolid | LIN |
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63 | Marbofloxacin | MAR |
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64 | Mecillinam | MEC |
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65 | Meropenem | MER |
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66 | Methicillin | MEH |
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67 | Metronidazole | MET |
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68 | Minocycline | MIN |
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69 | Moxifloxacin | MOX |
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70 | Mupirocin | MUP |
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71 | Nalidixic acid | NAL |
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72 | Netilmicin | NET |
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73 | Nitrofurantoin | NIT |
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74 | Norfloxacin | NOR |
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75 | Novobiocin | NOV |
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76 | Ofloxacin | OFL |
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77 | Orbifloxacin | ORB |
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78 | Oritavancin | ORI |
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79 | Oxacillin | OXA |
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80 | Oxytetracycline | OXY |
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81 | Pefloxacin | PEF |
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82 | Phenethicillin | PHN |
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83 | Phenoxymethypenicillin | PHE |
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84 | Pipemidic acid | PIE |
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85 | Piperacillin | PIP |
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86 | Piperacillin-tazobactam | PIT |
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87 | Pirlimycin | PIR |
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88 | Pradofloxacin | PRA |
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89 | Quinupristin-dalfopristin | QUD |
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90 | Relabactam | REL |
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91 | Retapamulin | RET |
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92 | Rifampicin | RIF |
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93 | Roxithromycin | ROX |
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94 | Spectinomycin | SPE |
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95 | Spectinomycin | SPE |
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96 | Streptomycin | STR |
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97 | Streptomycin | STR |
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98 | Sulbactam | SUL |
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99 | Sulbactam | SUL |
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100 | Sulfamethoxazole | SME |
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101 | Sulfamethoxazole | SME |
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102 | Sulfathiazole | STH |
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103 | Sulfathiazole | STH |
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104 | Sulfisoxazole | SIS |
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105 | Sulfisoxazole | SIS |
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106 | Tazobactam | TAZ |
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107 | Tazobactam | TAZ |
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108 | Tedizolid | TED |
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109 | Tedizolid | TED |
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110 | Teicoplanin | TEI |
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111 | Teicoplanin | TEI |
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112 | Telavancin | TEL |
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113 | Telavancin | TEL |
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114 | Telithromycin | TEH |
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115 | Telithromycin | TEH |
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116 | Tetracycline | TET |
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117 | Tetracycline | TET |
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118 | Tiamulin | TIA |
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119 | Tiamulin | TIA |
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120 | Ticarcillin | TIC |
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121 | Ticarcillin-clavulanate | TIL |
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122 | Tigecycline | TIG |
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123 | Tildipirosin | TID |
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124 | Tilmicosin | TIM |
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125 | Tobramycin | TOB |
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126 | Trimethoprim | TRI |
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127 | Trimethoprim-sulfamethoxazole | TRS |
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128 | Tulathromycin | TUL |
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129 | Vaborbactam | VAB |
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130 | Valnemulin | VAL |
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131 | Vancomycin | VAN |