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author dcouvin
date Mon, 10 Jan 2022 20:06:07 +0000
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* Problem when using __setitem__ in the TableResults object instead of the add_table method:
tr = TableResults("software X", "6.6.6", "20200128", "runsoft -i arg",
                  "sampleX")
tr["some table"]


* Table merge function should implement the copy argument.

* Table add_table function should implement the copy argument so that the added table will be copied instead of referenced.

* SortList entries does not get updated when the corresponding value in the Table object is changed.


REQUIRES ATTENTION SOON:
  * from testdata Salmonella Agone using raw reads / KMA, results_tab.txt etc. does not report the mdf(A) gene (18% ID), but the Table.as_txt method does.
  * Test two genes on same contig
  * cge.phenotype2genotype.feature exists twice also in cge.feature, only one copy should persist