Mercurial > repos > dcouvin > resfinder4
view resfinder/cge/out/beone.json @ 0:55051a9bc58d draft default tip
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author | dcouvin |
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date | Mon, 10 Jan 2022 20:06:07 +0000 |
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{ "software_result": { "type": "software_result", "key": "string*", "software_name": "string*", "software_version": "string*", "software_branch": "string", "software_commit": "string", "software_log": "string", "run_id": "string", "run_date": "date", "databases": "dict database:class", "genes": "dict gene:class", "seq_variations": "dict seq_variation:class", "phenotypes": "dict phenotype:class" }, "database": { "type": "database", "key": "string*", "database_name": "string*", "database_version": "string", "database_branch": "string", "database_commit": "string", "checksum_sha256": "char64" }, "gene": { "type": "gene", "key": "string*", "name": "string*", "identity": "percentage", "alignment_length": "integer", "ref_gene_lenght": "integer", "coverage": "percentage", "depth": "float", "ref_id": "string*", "ref_acc": "string", "ref_start_pos": "integer", "ref_end_pos": "integer", "query_id": "string", "query_start_pos": "integer", "query_end_pos": "integer", "phenotypes": "array phenotype.key", "ref_database": "database.key" }, "seq_region": { "type": "seq_region", "key": "string*", "name": "string*", "gene": "bool_or_unknown", "identity": "percentage", "alignment_length": "integer", "ref_gene_lenght": "integer", "coverage": "percentage", "depth": "float", "ref_id": "string*", "ref_acc": "string", "ref_start_pos": "integer", "ref_end_pos": "integer", "query_id": "string", "query_start_pos": "integer", "query_end_pos": "integer", "phenotypes": "array phenotype.key", "ref_database": "database.key" }, "seq_variation": { "type": "seq_variation", "key": "string*", "ref_id": "string*", "seq_var": "seq_var_string", "codon_change": "codon_change_string", "ref_codon": "nucleotides", "var_codon": "nucleotides", "ref_aa": "aminoacid_1_char", "var_aa": "aminoacid_1_char", "ref_start_pos": "integer", "ref_end_pos": "integer", "substitution": "bool", "insertion": "bool", "deletion": "bool", "ref_database": "database.key", "genes": "array gene.key", "phenotypes": "array phenotype.key" }, "phenotype": { "type": "phenotype", "key": "string*", "category": "vocabulary*", "amr_classes": "array vocabulary", "amr_resistance": "vocabulary", "amr_resistant": "bool_or_unknown", "genes": "array gene.key", "seq_variations": "array seq_variation.key", "ref_database": "database.key" } }