Mercurial > repos > dcouvin > resfinder4
view resfinder/scripts/wdl/computerome.conf @ 0:55051a9bc58d draft default tip
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author | dcouvin |
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date | Mon, 10 Jan 2022 20:06:07 +0000 |
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# TORQUE as a backend for Cromwell on Computerome # Here is where you can define the backend providers that Cromwell understands. # The default is a local provider. # To add additional backend providers, you should copy paste additional backends # of interest that you can find in the cromwell.example.backends folder # folder at https://www.github.com/broadinstitute/cromwell # Other backend providers include SGE, SLURM, Docker, udocker, Singularity. etc. # Don't forget you will need to customize them for your particular use case. backend { # Override the default backend. default = TORQUE # The list of providers. providers { TORQUE { # The actor that runs the backend. actor-factory = "cromwell.backend.impl.sfs.config.ConfigBackendLifecycleActorFactory" # The backend custom configuration. config { # Number of concurrent jobs allowed concurrent-job-limit = 500 # The list of possible runtime custom attributes. runtime-attributes = """ String walltime = "1:00:00" Int cpu = 1 Float memory_mb = 2048.0 String queue = "cge" """ submit = "qsub -W group_list=${queue} -A ${queue} -N ${job_name} -lwalltime=${walltime},nodes=1:ppn=${cpu},mem=${ceil(memory_mb)}mb -d ${cwd} -o ${out} -e ${err} ${script}" kill = "qdel ${job_id}" check-alive = "qstat ${job_id}" job-id-regex = "(\\d+)" } } } }