Mercurial > repos > dereeper > beagle
view execute_beagle.sh @ 0:a929ef8dea25 draft default tip
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author | dereeper |
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date | Tue, 14 Aug 2018 07:59:19 -0400 |
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#!/bin/bash vcf_input=$1 phase=$2 impute=$3 out_prefix="out" mkdir tmpdir$$ cp -rf $vcf_input tmpdir$$/input.vcf beagle gt=$vcf_input phase-its=$phase impute-its=$impute out=$out_prefix gunzip $out_prefix.vcf.gz rm -rf tmpdir$$