annotate Galaxy-Workflow-Haplotype_analysis.ga @ 1:bd20187f16c5 draft default tip

planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
author dereeper
date Tue, 14 Aug 2018 09:22:17 -0400
parents f81b8b6a97fb
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
1 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
2 "a_galaxy_workflow": "true",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
3 "annotation": "",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
4 "format-version": "0.1",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
5 "name": "Haplotype_analysis",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
6 "steps": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
7 "0": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
8 "annotation": "",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
9 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
10 "errors": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
11 "id": 0,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
12 "input_connections": {},
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
13 "inputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
14 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
15 "description": "runtime parameter for tool VCFtools Filter",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
16 "name": "input"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
17 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
18 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
19 "label": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
20 "name": "VCFtools Filter",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
21 "outputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
22 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
23 "name": "fileout",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
24 "type": "vcf"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
25 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
26 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
27 "name": "fileout_map",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
28 "type": "tabular"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
29 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
30 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
31 "name": "filelog",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
32 "type": "txt"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
33 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
34 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
35 "position": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
36 "left": 121.5,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
37 "top": 247
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
38 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
39 "post_job_actions": {},
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
40 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
41 "tool_shed_repository": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
42 "changeset_revision": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
43 "name": "vcftools_filter_stats_diversity",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
44 "owner": "dereeper",
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
45 "tool_shed": "toolshed.g2.bx.psu.edu"
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
46 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
47 "tool_state": "{\"nb_alleles_min\": \"\\\"2\\\"\", \"chromosomes\": \"\\\"3\\\"\", \"__page__\": null, \"nb_alleles_max\": \"\\\"4\\\"\", \"type_p\": \"\\\"ALL\\\"\", \"allow_missing\": \"\\\"1.0\\\"\", \"fileout_label\": \"\\\"filtered\\\"\", \"frequency\": \"\\\"0.001\\\"\", \"export\": \"\\\"VCF\\\"\", \"samples\": \"\\\"\\\"\", \"bound_end\": \"\\\"100000000\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_freq\": \"\\\"0.5\\\"\", \"__rerun_remap_job_id__\": null, \"bound_start\": \"\\\"1\\\"\"}",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
48 "tool_version": "2.0.0",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
49 "type": "tool",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
50 "uuid": "4a63fe7d-03bf-4f8a-b744-acc6c333fd56",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
51 "workflow_outputs": []
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
52 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
53 "1": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
54 "annotation": "",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
55 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/beagle/Beagle/1.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
56 "errors": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
57 "id": 1,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
58 "input_connections": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
59 "vcf_input": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
60 "id": 0,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
61 "output_name": "fileout"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
62 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
63 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
64 "inputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
65 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
66 "description": "runtime parameter for tool Beagle",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
67 "name": "vcf_input"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
68 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
69 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
70 "label": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
71 "name": "Beagle",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
72 "outputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
73 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
74 "name": "vcf_ouput",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
75 "type": "vcf"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
76 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
77 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
78 "name": "log",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
79 "type": "txt"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
80 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
81 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
82 "position": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
83 "left": 343.5,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
84 "top": 355
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
85 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
86 "post_job_actions": {},
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
87 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/beagle/Beagle/1.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
88 "tool_shed_repository": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
89 "changeset_revision": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
90 "name": "beagle",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
91 "owner": "dereeper",
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
92 "tool_shed": "toolshed.g2.bx.psu.edu"
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
93 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
94 "tool_state": "{\"phase\": \"\\\"5\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"impute\": \"\\\"5\\\"\", \"vcf_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
95 "tool_version": "1.0.0",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
96 "type": "tool",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
97 "uuid": "552bf003-578f-46d1-ac19-19dacad937d2",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
98 "workflow_outputs": []
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
99 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
100 "2": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
101 "annotation": "",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
102 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/getHaplotypesFromPhasedVCF/2.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
103 "errors": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
104 "id": 2,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
105 "input_connections": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
106 "input": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
107 "id": 1,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
108 "output_name": "vcf_ouput"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
109 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
110 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
111 "inputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
112 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
113 "description": "runtime parameter for tool Get Haplotypes From Phased VCF",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
114 "name": "input"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
115 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
116 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
117 "label": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
118 "name": "Get Haplotypes From Phased VCF",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
119 "outputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
120 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
121 "name": "output_distinct",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
122 "type": "txt"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
123 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
124 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
125 "name": "output_haplo",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
126 "type": "fasta"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
127 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
128 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
129 "name": "output_distinct_fasta",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
130 "type": "fasta"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
131 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
132 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
133 "position": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
134 "left": 581,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
135 "top": 194
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
136 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
137 "post_job_actions": {},
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
138 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/getHaplotypesFromPhasedVCF/2.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
139 "tool_shed_repository": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
140 "changeset_revision": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
141 "name": "sniplay",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
142 "owner": "dereeper",
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
143 "tool_shed": "toolshed.g2.bx.psu.edu"
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
144 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
145 "tool_state": "{\"output_label\": \"\\\"Haplotypes\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
146 "tool_version": "2.0.0",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
147 "type": "tool",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
148 "uuid": "4bfbaba7-3fc2-4076-82d6-3212c61fcb91",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
149 "workflow_outputs": []
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
150 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
151 "3": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
152 "annotation": "",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
153 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/haplophyle/haplophyle/1.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
154 "errors": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
155 "id": 3,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
156 "input_connections": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
157 "input": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
158 "id": 2,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
159 "output_name": "output_distinct_fasta"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
160 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
161 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
162 "inputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
163 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
164 "description": "runtime parameter for tool Haplophyle",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
165 "name": "input"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
166 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
167 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
168 "label": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
169 "name": "Haplophyle",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
170 "outputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
171 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
172 "name": "fileout",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
173 "type": "json"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
174 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
175 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
176 "name": "dotfile",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
177 "type": "txt"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
178 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
179 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
180 "name": "filelog",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
181 "type": "txt"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
182 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
183 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
184 "position": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
185 "left": 856.5,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
186 "top": 377
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
187 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
188 "post_job_actions": {},
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
189 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/haplophyle/haplophyle/1.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
190 "tool_shed_repository": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
191 "changeset_revision": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
192 "name": "haplophyle",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
193 "owner": "dereeper",
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
194 "tool_shed": "toolshed.g2.bx.psu.edu"
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
195 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
196 "tool_state": "{\"color\": \"{\\\"__current_case__\\\": 0, \\\"choice\\\": \\\"false\\\"}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
197 "tool_version": "1.0.0",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
198 "type": "tool",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
199 "uuid": "31d5583a-740b-46e2-80d8-02d0315ac954",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
200 "workflow_outputs": []
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
201 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
202 "4": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
203 "annotation": "",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
204 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/cytoscape/Cytoscape/1.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
205 "errors": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
206 "id": 4,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
207 "input_connections": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
208 "input": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
209 "id": 3,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
210 "output_name": "fileout"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
211 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
212 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
213 "inputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
214 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
215 "description": "runtime parameter for tool Cytoscape",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
216 "name": "input"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
217 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
218 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
219 "label": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
220 "name": "Cytoscape",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
221 "outputs": [
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
222 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
223 "name": "cytoscape_html",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
224 "type": "html"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
225 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
226 {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
227 "name": "filelog",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
228 "type": "txt"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
229 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
230 ],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
231 "position": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
232 "left": 1089,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
233 "top": 270
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
234 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
235 "post_job_actions": {},
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
236 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/cytoscape/Cytoscape/1.0.0",
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
237 "tool_shed_repository": {
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
238 "changeset_revision": null,
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
239 "name": "cytoscape",
1
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
240 "owner": "dereeper",
bd20187f16c5 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 0
diff changeset
241 "tool_shed": "toolshed.g2.bx.psu.edu"
0
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
242 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
243 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
244 "tool_version": "1.0.0",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
245 "type": "tool",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
246 "uuid": "8e3d9a5c-09a2-4ef1-acd5-07ca5bb43484",
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
247 "workflow_outputs": []
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
248 }
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
249 },
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
250 "tags": [],
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
251 "uuid": "2ce7df85-4151-40cc-b636-a135663b90ee"
f81b8b6a97fb planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents:
diff changeset
252 }