Mercurial > repos > dereeper > mlmm
view MLMM.sh @ 1:380b364980f9 draft default tip
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
author | dereeper |
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date | Mon, 16 Apr 2018 08:50:05 -0400 |
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#!/bin/bash geno=$1 map=$2 pheno=$3 steps=$4 method=$5 output=$6 pdf=$7 kinship=$8 rss=$9 step_table=${10} log=${11} directory=`dirname $0` mkdir tmpdir$$ cp -rf $geno tmpdir$$/geno cp -rf $map tmpdir$$/map cp -rf $pheno tmpdir$$/pheno perl $directory/MLMM.pl -g tmpdir$$/geno -i tmpdir$$/map -p tmpdir$$/pheno -s $steps -m $method -o tmpdir$$/output -d $directory/source_library >>$log 2>&1 mv tmpdir$$/output.pdf $pdf mv tmpdir$$/output.kinship $kinship mv tmpdir$$/output.res_asso $output mv tmpdir$$/output.rss $rss mv tmpdir$$/output.steptable $step_table