annotate COG/bac-genomics-scripts/tbl2tab/example.tbl @ 3:e42d30da7a74 draft

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author dereeper
date Thu, 30 May 2024 11:52:25 +0000
parents
children
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3
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parents:
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1 >Feature EPE_c
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2 191 310 gene
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3 locus_tag EPE_c00010
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4 191 310 misc_RNA
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5 inference COORDINATES:profile:Infernal:1.1
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6 product Thr_leader
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7 336 2798 gene
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8 locus_tag EPE_c00020
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9 gene thrA
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10 336 2798 CDS
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11 protein_id gnl|goetting|EPE_c00020
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12 EC_number 1.1.1.3
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13 EC_number 2.7.2.4
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14 inference ab initio prediction:Prodigal:2.60
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15 inference similar to AA sequence:K-12_MG1655:NP_414543.1
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16 product bifunctional aspartokinase/homoserine dehydrogenase 1
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17 3168 4697 gene
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18 locus_tag EPE_c00030
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19 gene rrsH
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20 3168 4697 rRNA
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21 inference COORDINATES:profile:RNAmmer:1.2
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22 product 16S ribosomal RNA
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23 4771 4847 gene
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24 locus_tag EPE_c00040
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25 pseudo
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26 4771 4847 tRNA
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27 inference COORDINATES:profile:Aragorn:1.2
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parents:
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28 product tRNA-Pseudo-xxx
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29 pseudo
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30 7154 5010 gene
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31 locus_tag EPE_c00050
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32 gene fadJ
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33 7154 5010 CDS
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34 protein_id gnl|goetting|EPE_c00050
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35 EC_number 1.1.1.35
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36 EC_number 4.2.1.17
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37 EC_number 5.1.2.3
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38 EC_number 5.3.3.8
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39 inference ab initio prediction:Prodigal:2.60
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40 inference similar to AA sequence:K-12_MG1655:NP_416843.1
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41 product fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase
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42 7068 7430 gene
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43 locus_tag EPE_c00060
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44 gene ssrA
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45 7068 7430 tmRNA
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46 inference COORDINATES:profile:Aragorn:1.2
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47 product transfer-messenger RNA, SsrA
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48 7513 8883 repeat_region
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49 rpt_family CRISPR
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50 score 23
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51 8979 9275 gene
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52 locus_tag EPE_c00080
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53 8979 9275 CDS
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54 protein_id gnl|goetting|EPE_c00080
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55 inference ab initio prediction:Prodigal:2.60
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56 inference similar to AA sequence:K-12_MG1655:NP_414546.1
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57 note DUF2502 family putative periplasmic protein
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58 product hypothetical protein
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59 >Feature EPE_89p
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60 61 369 gene
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61 pseudo
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62 locus_tag EPE_89p00010
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63 gene ydhA
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64 gene_desc hypothetical protein fragment