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3
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1 #!/usr/bin/R
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2
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3 library(UpSetR)
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4 #library(svglite)
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5 args = commandArgs(trailingOnly=TRUE)
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6
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7
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8 movies <- read.csv(file=args[1], header = T, sep = "\t")
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9
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10 nb <- as.integer(args[3])+1
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11
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12 size <- 0.5
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13 if (as.integer(nb)>60){
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14 size <- 0.2
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15 }
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16
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17 sets <- names(movies[2:nb])
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18 #svglite(args[2], width = 4, height = 4)
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19 pdf(args[2])
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20 #upset(movies,nintersects = 20,number.angles = 0, mb.ratio = c(0.35, 0.65),order.by = "freq", sets = sets, point.size = 0.5, line.size = 0.3, mainbar.y.label = "Intersections", sets.x.label = "Nb genes", text.scale = c(0.8, 0.8, 0.8, 0.8, size, 0.5))
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21 upset(movies,nintersects = 20,number.angles = 0, mb.ratio = c(0.35, 0.65), order.by = "freq",keep.order = T, sets = sets, point.size = 1.5, line.size = 0.3, mainbar.y.label = "Intersections", sets.x.label = "Nb genes", text.scale = c(0.8, 0.8, 0.8, 0.8, size, 0.5))
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22 dev.off()
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