Mercurial > repos > dereeper > pangenome_explorer

comparison PanExplorer.xml @ 7:2c65d4257fe6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Thu, 30 May 2024 12:30:04 +0000
parents 35d71348e81e
children f919ffe96425
comparison
equal deleted inserted replaced
6:35d71348e81e 7:2c65d4257fe6
6 <requirement type="package" version="7.480">mafft</requirement> 6 <requirement type="package" version="7.480">mafft</requirement>
7 <requirement type="package" version="14.137">mcl</requirement> 7 <requirement type="package" version="14.137">mcl</requirement>
8 <requirement type="package" version="3.697">phylip</requirement> 8 <requirement type="package" version="3.697">phylip</requirement>
9 <requirement type="package" version="1.7.2">perl-bioperl</requirement> 9 <requirement type="package" version="1.7.2">perl-bioperl</requirement>
10 --> 10 -->
11 <requirement type="package" version="2.4.2">singularity</requirement> 11 <requirement type="package" version="1.30">perl-yaml</requirement>
12 <requirement type="package" version="3.8.7">singularity</requirement>
12 13
13 </requirements> 14 </requirements>
14 15
15 <command><![CDATA[ 16 <command><![CDATA[
16 module load system/singularity/3.6.0; 17
17 export PANEX_PATH=${__tool_directory__}; 18 export PANEX_PATH=${__tool_directory__};
18 19
19 perl ${__tool_directory__}/Perl/generateConfig.pl '$private_genomes' '$input' config.yaml '$private_genomes_fasta'; 20 perl ${__tool_directory__}/Perl/generateConfig.pl '$private_genomes' '$input' config.yaml '$private_genomes_fasta';
20 21
21 cat config.yaml >$logfile; 22 cat config.yaml >$logfile;