Mercurial > repos > dereeper > pangenome_explorer
comparison COG/bac-genomics-scripts/tbl2tab/example.tbl @ 3:e42d30da7a74 draft
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author | dereeper |
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date | Thu, 30 May 2024 11:52:25 +0000 |
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2:97e4e3e818b6 | 3:e42d30da7a74 |
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1 >Feature EPE_c | |
2 191 310 gene | |
3 locus_tag EPE_c00010 | |
4 191 310 misc_RNA | |
5 inference COORDINATES:profile:Infernal:1.1 | |
6 product Thr_leader | |
7 336 2798 gene | |
8 locus_tag EPE_c00020 | |
9 gene thrA | |
10 336 2798 CDS | |
11 protein_id gnl|goetting|EPE_c00020 | |
12 EC_number 1.1.1.3 | |
13 EC_number 2.7.2.4 | |
14 inference ab initio prediction:Prodigal:2.60 | |
15 inference similar to AA sequence:K-12_MG1655:NP_414543.1 | |
16 product bifunctional aspartokinase/homoserine dehydrogenase 1 | |
17 3168 4697 gene | |
18 locus_tag EPE_c00030 | |
19 gene rrsH | |
20 3168 4697 rRNA | |
21 inference COORDINATES:profile:RNAmmer:1.2 | |
22 product 16S ribosomal RNA | |
23 4771 4847 gene | |
24 locus_tag EPE_c00040 | |
25 pseudo | |
26 4771 4847 tRNA | |
27 inference COORDINATES:profile:Aragorn:1.2 | |
28 product tRNA-Pseudo-xxx | |
29 pseudo | |
30 7154 5010 gene | |
31 locus_tag EPE_c00050 | |
32 gene fadJ | |
33 7154 5010 CDS | |
34 protein_id gnl|goetting|EPE_c00050 | |
35 EC_number 1.1.1.35 | |
36 EC_number 4.2.1.17 | |
37 EC_number 5.1.2.3 | |
38 EC_number 5.3.3.8 | |
39 inference ab initio prediction:Prodigal:2.60 | |
40 inference similar to AA sequence:K-12_MG1655:NP_416843.1 | |
41 product fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase | |
42 7068 7430 gene | |
43 locus_tag EPE_c00060 | |
44 gene ssrA | |
45 7068 7430 tmRNA | |
46 inference COORDINATES:profile:Aragorn:1.2 | |
47 product transfer-messenger RNA, SsrA | |
48 7513 8883 repeat_region | |
49 rpt_family CRISPR | |
50 score 23 | |
51 8979 9275 gene | |
52 locus_tag EPE_c00080 | |
53 8979 9275 CDS | |
54 protein_id gnl|goetting|EPE_c00080 | |
55 inference ab initio prediction:Prodigal:2.60 | |
56 inference similar to AA sequence:K-12_MG1655:NP_414546.1 | |
57 note DUF2502 family putative periplasmic protein | |
58 product hypothetical protein | |
59 >Feature EPE_89p | |
60 61 369 gene | |
61 pseudo | |
62 locus_tag EPE_89p00010 | |
63 gene ydhA | |
64 gene_desc hypothetical protein fragment |