Mercurial > repos > dereeper > pangenome_explorer
comparison COG/bac-genomics-scripts/tbl2tab/example.tbl @ 3:e42d30da7a74 draft
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| author | dereeper |
|---|---|
| date | Thu, 30 May 2024 11:52:25 +0000 |
| parents | |
| children |
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| 2:97e4e3e818b6 | 3:e42d30da7a74 |
|---|---|
| 1 >Feature EPE_c | |
| 2 191 310 gene | |
| 3 locus_tag EPE_c00010 | |
| 4 191 310 misc_RNA | |
| 5 inference COORDINATES:profile:Infernal:1.1 | |
| 6 product Thr_leader | |
| 7 336 2798 gene | |
| 8 locus_tag EPE_c00020 | |
| 9 gene thrA | |
| 10 336 2798 CDS | |
| 11 protein_id gnl|goetting|EPE_c00020 | |
| 12 EC_number 1.1.1.3 | |
| 13 EC_number 2.7.2.4 | |
| 14 inference ab initio prediction:Prodigal:2.60 | |
| 15 inference similar to AA sequence:K-12_MG1655:NP_414543.1 | |
| 16 product bifunctional aspartokinase/homoserine dehydrogenase 1 | |
| 17 3168 4697 gene | |
| 18 locus_tag EPE_c00030 | |
| 19 gene rrsH | |
| 20 3168 4697 rRNA | |
| 21 inference COORDINATES:profile:RNAmmer:1.2 | |
| 22 product 16S ribosomal RNA | |
| 23 4771 4847 gene | |
| 24 locus_tag EPE_c00040 | |
| 25 pseudo | |
| 26 4771 4847 tRNA | |
| 27 inference COORDINATES:profile:Aragorn:1.2 | |
| 28 product tRNA-Pseudo-xxx | |
| 29 pseudo | |
| 30 7154 5010 gene | |
| 31 locus_tag EPE_c00050 | |
| 32 gene fadJ | |
| 33 7154 5010 CDS | |
| 34 protein_id gnl|goetting|EPE_c00050 | |
| 35 EC_number 1.1.1.35 | |
| 36 EC_number 4.2.1.17 | |
| 37 EC_number 5.1.2.3 | |
| 38 EC_number 5.3.3.8 | |
| 39 inference ab initio prediction:Prodigal:2.60 | |
| 40 inference similar to AA sequence:K-12_MG1655:NP_416843.1 | |
| 41 product fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase | |
| 42 7068 7430 gene | |
| 43 locus_tag EPE_c00060 | |
| 44 gene ssrA | |
| 45 7068 7430 tmRNA | |
| 46 inference COORDINATES:profile:Aragorn:1.2 | |
| 47 product transfer-messenger RNA, SsrA | |
| 48 7513 8883 repeat_region | |
| 49 rpt_family CRISPR | |
| 50 score 23 | |
| 51 8979 9275 gene | |
| 52 locus_tag EPE_c00080 | |
| 53 8979 9275 CDS | |
| 54 protein_id gnl|goetting|EPE_c00080 | |
| 55 inference ab initio prediction:Prodigal:2.60 | |
| 56 inference similar to AA sequence:K-12_MG1655:NP_414546.1 | |
| 57 note DUF2502 family putative periplasmic protein | |
| 58 product hypothetical protein | |
| 59 >Feature EPE_89p | |
| 60 61 369 gene | |
| 61 pseudo | |
| 62 locus_tag EPE_89p00010 | |
| 63 gene ydhA | |
| 64 gene_desc hypothetical protein fragment |