Mercurial > repos > dereeper > ragoo
changeset 10:83e37d6aee59 draft
Uploaded
| author | dereeper |
|---|---|
| date | Mon, 26 Jul 2021 18:00:57 +0000 |
| parents | 35f0fcf77bdf |
| children | 047933657fae |
| files | ragoo.xml |
| diffstat | 1 files changed, 33 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ragoo.xml Mon Jul 26 18:00:57 2021 +0000 @@ -0,0 +1,33 @@ +<tool id="ragoo" name="RaGOO" version="1.0"> + <description>Order and assign scaffolds</description> + <requirements> + <requirement type="package" version="3.0.2">intervaltree</requirement> + <requirement type="package" version="1.21.1">numpy</requirement> + <requirement type="package" version="2.21">minimap2</requirement> + </requirements> + + <command>perl ${__tool_directory__}/ragoo.pl $input $reference $output $output2 +</command> + + + <inputs> + <param format="fasta" name="input" type="data" label="Fasta file with contigs to be ordered and oriented: "/> + <param format="fasta" name="reference" type="data" label="Reference fasta file"/> + + </inputs> + + <outputs> + <data format="fasta" name="output" label="Fasta output of assigned scaffolds"/> + <data format="fasta" name="output2" label="Fasta output of assigned scaffolds (without Chr0)"/> +</outputs> + + <help> + For full documentation, please go to the RaGOO website : https://github.com/malonge/RaGOO + +</help> + + <citations> + <citation type="doi"> 10.1186/s13059-019-1829-6 </citation> + + </citations> +</tool>