Mercurial > repos > dereeper > roary_plots

annotate Roary/t/data/core_alignment_gene_lookup/query_3.gff @ 3:e95344f6dfc5 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Fri, 12 Nov 2021 16:32:26 +0000
parents c47a5f61bc9f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
1 ##gff-version 3
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
2 ##sequence-region gnl|IFR|Ef_HIJ123_contig000001 1 1320
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
3 gnl|IFR|Ef_HIJ123_contig000001 Prodigal:2.6 CDS 52 513 . + 0 ID=Ef_HIJ123_00010;Parent=Ef_HIJ123_00010_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_HIJ123_00010;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_HIJ123_00010
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
4 gnl|IFR|Ef_HIJ123_contig000001 Prodigal:2.6 CDS 510 746 . + 0 ID=Ef_HIJ123_00020;Parent=Ef_HIJ123_00020_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_HIJ123_00020;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_HIJ123_00020
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
5 gnl|IFR|Ef_HIJ123_contig000001 Prodigal:2.6 CDS 878 1207 . + 0 ID=Ef_HIJ123_00030;Parent=Ef_HIJ123_00030_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:A911_06907;locus_tag=Ef_HIJ123_00030;product=A911_06907 putative sugar transferase:1355468 reverse MW:73559;protein_id=gnl|IFR|Ef_HIJ123_00030
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
6 ##FASTA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
7 >gnl|IFR|Ef_HIJ123_contig000001
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
8 GAAAAAGAAAAAATAAACTATAAAAACATATCAGCTGAACTTGCTTGGGAAATGAATCTA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
9 CCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGGCATGCTGCA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
10 ATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATGGATTTAATG
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
11 AAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATATTCAATTATA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
12 ACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATATTTGACTTTA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
13 ATTAATAAAATTCCAATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTAAAAACCGGA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
14 GTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAACAATGATTAT
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
15 AGTGATGTGTTTAAGAATAAAATGTATGTTGGCGATATTGGAAAAAATTTTTACTATTCA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
16 GAAAAGCCAAGCATGAAATATTTACCTAGATGATTAATGAAGATACAATGTATCAGACAT
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
17 CGCTTTGCTTATTATTTTCAAATAGAGATATTACTTATATTGACATGGAAGAAATAAAAC
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
18 CAGCAAAGGCATTCGATACAATGTGTGATTCAGCTAACAAATTTGGTTTTAAGAAACCAA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
19 CGGATAAAAAATTTTTTGAAGGAGTTATGAATGGAGATTTAGCAGGTTTTATACCTATTA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
20 ATTTATTTATTGATAAAAAAATTTAATTTATAATAACAAAGTTATTTATAAAGATAATGA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
21 TAGCATCCATCTTCAAATCACATCTACAAATTTAATTGAAATTTATAAACAATCTAAAGA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
22 ATATATCAACTTTACTAAAGAATTTTTTGATAAACCTTTGAAATATGAAAATTTGGGAAT
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
23 ATTTTTAAAACCACAAGAATTCGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTTGC
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
24 TAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAAGC
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
25 TAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGAGT
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
26 TAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGATAT
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
27 AGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGTAA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
28 TATTTAGGAGAAAGATCTGTAAATTAATAAAAAAAAGATATAACTGTGTTTAAAATTAGA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
29 GAAAGGAATCAATATGAAACAAGGGGATTTTACAAAAGTTGCAAAACATTATCACAATAG