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annotate Roary/t/data/expected_mafft_input.fa.aln @ 3:e95344f6dfc5 draft default tip

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author dereeper
date Fri, 12 Nov 2021 16:32:26 +0000
parents c47a5f61bc9f
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1 >1111#5_04506
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9 ---------atggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
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10 gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
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11 attgataataaagttcaaccgcttatcaggcgttga
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12 >1234_8#75_04759
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13 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
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14 gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
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15 gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
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16 ctggattctttccggcgggatagtgctttttatacctggttgtatcgtattgcggtcaat
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17 accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
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18 attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
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19 ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
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20 gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
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21 gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
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22 attgataataaagttcaaccgcttatcaggcgttga
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23 >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853
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24 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
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25 gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
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26 gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
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27 ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
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28 accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
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29 attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
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30 ttaatgttttcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
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31 gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
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32 gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
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33 attgataataaagttcaaccgcttatcaggcgttga
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34 >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736
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35 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
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36 gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
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37 gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
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38 ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
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39 accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
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40 attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
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41 ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
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42 gatttacgtatggcaatcaccttacgggagctggatggcctgagctgtgaagagatagcg
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43 gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
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44 attgataataaagttcaaccgcttatcaggcgttga
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45 >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783
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46 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
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47 gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
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48 gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
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49 ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
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50 accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
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51 attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
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52 ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
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53 gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
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54 gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
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55 attgataataaagttcaaccgcttatcaggcgttga
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56 >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741
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57 atgagcgagcagttaacggac---gtcctggttgaacgggtccagaagggagatcagaaa
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58 gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
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59 gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
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60 ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
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61 accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
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62 attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
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63 ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
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64 gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
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65 gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
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66 attgataataaagttcaaccgcttatcaggcgttga