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comparison Roary/t/data/expected_nuc_multifasta.fa.aln @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:c47a5f61bc9f
1 >1
2 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC
3 CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT
4 AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG
5 AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
6 CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA
7 ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA
8 GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG
9 CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
10 GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT
11 AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA
12 GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT
13 CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
14 ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT
15 CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT
16 AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC
17 GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA
18 ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT
19 AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT
20 GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC
21 GAAGCGCTGCATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
22 GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC
23 CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA
24 CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT
25 AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT
26 TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA
27 ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC
28 GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA
29 AAACGAGTTGGGGATGAAAATATTTGGCGTCAG------NNNAATATTTCTTCATTAATC
30 ACATCT
31 >2
32 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC
33 CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT
34 AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG
35 AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
36 CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA
37 ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA
38 GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG
39 CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
40 GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT
41 AACGGGCATCACTATACCAACACGCAGCTCCCT---GCAGAGATGAAAATCGGCGCAAAA
42 GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT
43 CATCACGCCAATAATTTGTGGGTGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
44 ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT
45 CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT
46 AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC
47 GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA
48 ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT
49 AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT
50 GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC
51 GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
52 GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC
53 CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA
54 CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT
55 AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT
56 TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA
57 ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC
58 GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA
59 AAACGAGTTGGGGATGAAAATATTTGG---CAGTCAGTAAAAGGTATTTCTTCATTAATC
60 ACATCT
61 >3
62 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC
63 CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT
64 AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG
65 AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
66 CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA
67 ATGGCAAACCAAATGGAGTTAGCCAAGGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA
68 GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG
69 CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
70 GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT
71 AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA
72 GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT
73 CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
74 ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT
75 CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT
76 AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC
77 GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA
78 ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT
79 AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT
80 GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC
81 GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
82 GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC
83 CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA
84 CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT
85 AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT
86 TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA
87 ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC
88 GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA
89 AAACGAGTTGGGGATGAAAATATTTGG---CAGTCAGTAAAAGGTATTTCTTCATTAATC
90 ACATCT