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diff Roary/t/data/expected_nuc_multifasta.fa.aln @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Roary/t/data/expected_nuc_multifasta.fa.aln	Fri May 14 20:27:06 2021 +0000
@@ -0,0 +1,90 @@
+>1
+ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC
+CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT
+AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG
+AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
+CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA
+ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA
+GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG
+CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
+GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT
+AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA
+GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT
+CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
+ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT
+CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT
+AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC
+GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA
+ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT
+AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT
+GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC
+GAAGCGCTGCATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
+GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC
+CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA
+CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT
+AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT
+TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA
+ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC
+GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA
+AAACGAGTTGGGGATGAAAATATTTGGCGTCAG------NNNAATATTTCTTCATTAATC
+ACATCT
+>2
+ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC
+CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT
+AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG
+AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
+CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA
+ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA
+GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG
+CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
+GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT
+AACGGGCATCACTATACCAACACGCAGCTCCCT---GCAGAGATGAAAATCGGCGCAAAA
+GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT
+CATCACGCCAATAATTTGTGGGTGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
+ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT
+CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT
+AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC
+GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA
+ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT
+AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT
+GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC
+GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
+GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC
+CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA
+CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT
+AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT
+TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA
+ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC
+GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA
+AAACGAGTTGGGGATGAAAATATTTGG---CAGTCAGTAAAAGGTATTTCTTCATTAATC
+ACATCT
+>3
+ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC
+CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT
+AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG
+AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
+CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA
+ATGGCAAACCAAATGGAGTTAGCCAAGGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA
+GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG
+CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
+GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT
+AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA
+GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT
+CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
+ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT
+CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT
+AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC
+GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA
+ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT
+AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT
+GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC
+GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
+GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC
+CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA
+CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT
+AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT
+TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA
+ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC
+GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA
+AAACGAGTTGGGGATGAAAATATTTGG---CAGTCAGTAAAAGGTATTTCTTCATTAATC
+ACATCT