diff Roary/t/data/expected_combined_proteome_with_filtering.fa @ 0:c47a5f61bc9f draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Roary/t/data/expected_combined_proteome_with_filtering.fa	Fri May 14 20:27:06 2021 +0000
@@ -0,0 +1,82 @@
+>1234#10_00001 nudix hydrolase
+MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL
+GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP
+SPLFTEYMLDAVNLYLKEYAPLVH*
+>1234#10_00002 intramembrane serine protease
+MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ
+YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI
+SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV
+YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF
+YSNRS*
+>1234#10_00003 hypothetical protein
+VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE
+LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN*
+>1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase
+LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID
+LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG
+GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL
+GKALRMAIAQDSAAAGAIPSTKGVLE*
+>1234#10_00006 imidazole glycerol phosphate synthase subunit HisH
+MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG
+LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK
+VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV
+EKNNIFGTQFHPEKSHTHGLKLLENFIRFI*
+>1234#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
+MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG
+VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY
+GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL
+EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS
+I*
+>1234_00186 GGDEF family protein
+MNFENEYDLEKLVNNSLDLLTIVDLSGNVLLVNPAFERTLGWKKEDLVGKDPFHLLHPED
+KESTYKEFEKLNQGLLTLSFQNRYICADGQYRYFSWTASPDLVSGLVYVTGRDITDVIES
+NRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMID
+ADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQI
+AERLVQTVREFSWEKRSVTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSGR
+XXXXXXXXXXXXXXXXXXXYYI*
+>1234_00325 only a few unknowns so keep
+MAFDPSVPQQQAQAPAGTLLFPEGSSANTLNVLHSGTVRYLTEVPGGRKLELFKLNGANL
+TPGSVALFTSGRYPFHLQAEEACVISTYAMNRDTISKSVGSRVSLGLMVARTLLREITEL
+FKKSNQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGSPIPEVSADVVDPVMRLCREN
+LKLFFDNGGILPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVMQDPKILNVL
+FTADPSMLAYVCSKLANVLDQISGILKTCLTDLDEAFRIFFIGENSLVEKFYLILDITSS
+GYGTAPAEFVIPVLGAFAGKIEKYKNGHQALFGVPVANISPNTQAFQSKAVTLAKKMEET
+APKVQAPVTSSATAGVDVDAIRKELDNSASVIIQFSGLGAEQIKEFSALMVKVKSLKNPL
+DPEGDNRKVRRTLGRHYWDMYQECFTKYMNSNRNVPKPVELMLKYGYFDETLVDDSQIAF
+MYTQKDPANFTSNVPISLGTEWLEKVFKREVPTSLDEMGQNFFEKVKLENRNIVIKKESD
+IPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILEEV
+VHELMAVDYSIFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSIHRGA
+GSKESPGRIVLPIFAQGDLKTMVADALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQ
+FFKKNKDLSMEIKEKLASDFKRFRNDRDIFANDYQLWMKYEADGVQRLNKVVRGIFYRHI
+PFSKQVRDKVAXXXXXXXXXXXXXLLPLQRSITDLLILEIENILK*
+>1234_00377 Uncharacterized protein conserved in bacteria
+MTLNEFAKNVLFGSGLEDKLFSPPVHPVDIRSFDFLNVPSLPAREKKIQISEQKSKIPRL
+EQLFNEENRIITLHHFANHELMAIELFAWAILKFQDAPSSIRFGLYRTLLEEQTHLKMYL
+SEMKKGGMELGDRPLNFIFWKQVPKMQTLEKFXXXXXXXXXXXXXXXXXF*
+>1234#10_00016 hypothetical protein
+MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD
+IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL
+LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR
+IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP
+GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA
+VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS
+AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL
+DEIMVEPEKPKKK*
+>1234#10_00017 LipL45-like lipoprotein
+MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA
+ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI
+VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA
+VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV
+EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK
+LKLNPKETF*
+>1234#10_00018 putative lipoprotein
+MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE
+EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR
+IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS
+PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS
+SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE
+DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL
+IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA
+PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK
+FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL
+RNLKIEYKGYK*