annotate Roary/t/data/expected_combined_proteome_with_filtering.fa @ 0:c47a5f61bc9f draft

Uploaded
author dereeper
date Fri, 14 May 2021 20:27:06 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
1 >1234#10_00001 nudix hydrolase
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
2 MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
3 GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
4 SPLFTEYMLDAVNLYLKEYAPLVH*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
5 >1234#10_00002 intramembrane serine protease
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
6 MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
7 YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
8 SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
9 YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
10 YSNRS*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
11 >1234#10_00003 hypothetical protein
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
12 VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
13 LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
14 >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
15 LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
16 LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
17 GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
18 GKALRMAIAQDSAAAGAIPSTKGVLE*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
19 >1234#10_00006 imidazole glycerol phosphate synthase subunit HisH
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
20 MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
21 LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
22 VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
23 EKNNIFGTQFHPEKSHTHGLKLLENFIRFI*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
24 >1234#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
25 MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
26 VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
27 GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
28 EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
29 I*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
30 >1234_00186 GGDEF family protein
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
31 MNFENEYDLEKLVNNSLDLLTIVDLSGNVLLVNPAFERTLGWKKEDLVGKDPFHLLHPED
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
32 KESTYKEFEKLNQGLLTLSFQNRYICADGQYRYFSWTASPDLVSGLVYVTGRDITDVIES
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
33 NRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMID
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
34 ADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQI
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
35 AERLVQTVREFSWEKRSVTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSGR
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
36 XXXXXXXXXXXXXXXXXXXYYI*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
37 >1234_00325 only a few unknowns so keep
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
38 MAFDPSVPQQQAQAPAGTLLFPEGSSANTLNVLHSGTVRYLTEVPGGRKLELFKLNGANL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
39 TPGSVALFTSGRYPFHLQAEEACVISTYAMNRDTISKSVGSRVSLGLMVARTLLREITEL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
40 FKKSNQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGSPIPEVSADVVDPVMRLCREN
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
41 LKLFFDNGGILPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVMQDPKILNVL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
42 FTADPSMLAYVCSKLANVLDQISGILKTCLTDLDEAFRIFFIGENSLVEKFYLILDITSS
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
43 GYGTAPAEFVIPVLGAFAGKIEKYKNGHQALFGVPVANISPNTQAFQSKAVTLAKKMEET
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
44 APKVQAPVTSSATAGVDVDAIRKELDNSASVIIQFSGLGAEQIKEFSALMVKVKSLKNPL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
45 DPEGDNRKVRRTLGRHYWDMYQECFTKYMNSNRNVPKPVELMLKYGYFDETLVDDSQIAF
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
46 MYTQKDPANFTSNVPISLGTEWLEKVFKREVPTSLDEMGQNFFEKVKLENRNIVIKKESD
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
47 IPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILEEV
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
48 VHELMAVDYSIFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSIHRGA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
49 GSKESPGRIVLPIFAQGDLKTMVADALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQ
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
50 FFKKNKDLSMEIKEKLASDFKRFRNDRDIFANDYQLWMKYEADGVQRLNKVVRGIFYRHI
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
51 PFSKQVRDKVAXXXXXXXXXXXXXLLPLQRSITDLLILEIENILK*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
52 >1234_00377 Uncharacterized protein conserved in bacteria
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
53 MTLNEFAKNVLFGSGLEDKLFSPPVHPVDIRSFDFLNVPSLPAREKKIQISEQKSKIPRL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
54 EQLFNEENRIITLHHFANHELMAIELFAWAILKFQDAPSSIRFGLYRTLLEEQTHLKMYL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
55 SEMKKGGMELGDRPLNFIFWKQVPKMQTLEKFXXXXXXXXXXXXXXXXXF*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
56 >1234#10_00016 hypothetical protein
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
57 MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
58 IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
59 LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
60 IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
61 GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
62 VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
63 AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
64 DEIMVEPEKPKKK*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
65 >1234#10_00017 LipL45-like lipoprotein
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
66 MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
67 ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
68 VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
69 VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
70 EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
71 LKLNPKETF*
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
72 >1234#10_00018 putative lipoprotein
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
73 MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
74 EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
75 IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
76 PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
77 SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
78 DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
79 IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
80 PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
81 FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
82 RNLKIEYKGYK*