Mercurial > repos > dereeper > sniplay

annotate SNP_density/calculateSlidingWindowsSNPdensitiesFromHapmap.sh @ 1:420b57c3c185 draft

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author dereeper
date Fri, 10 Jul 2015 04:39:30 -0400
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1 #!/bin/bash
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2
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3 tool_path=$(dirname $0)
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4 hapmap=$1
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5 fileout=$2
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6 fileout_bysample=$3
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7 step=$4
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9 perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromHapmap.pl -i $hapmap -o $fileout -s $step
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10
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11 cp $fileout.by_sample $fileout_bysample
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12 rm $fileout.by_sample
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