Mercurial > repos > dereeper > sniplay

comparison PedToFasta/pedToFasta.xml @ 4:10627af23f10 draft

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planemo upload
author gandres
date Tue, 15 Dec 2015 05:18:02 -0500
parents 420b57c3c185
children
comparison
equal deleted inserted replaced
3:345f88a8f483 4:10627af23f10
5 5
6 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work --> 6 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
7 <requirements> 7 <requirements>
8 <requirement type="binary">perl</requirement> 8 <requirement type="binary">perl</requirement>
9 </requirements> 9 </requirements>
10
11 <!-- [STRONGLY RECOMMANDED] Exit code rules -->
12 <stdio>
13 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
14 <exit_code range="1:" level="fatal" />
15 </stdio>
10 16
11 <!-- [OPTIONAL] Command to be executed to get the tool's version string --> 17 <!-- [OPTIONAL] Command to be executed to get the tool's version string -->
12 <version_command> 18 <version_command>
13 <!-- 19 <!--
14 tool_binary -v 20 tool_binary -v
29 <!-- [REQUIRED] Output files --> 35 <!-- [REQUIRED] Output files -->
30 <outputs> 36 <outputs>
31 <data name="fileout" type="data" format="fasta" label="${fileout_label}.fa" /> 37 <data name="fileout" type="data" format="fasta" label="${fileout_label}.fa" />
32 </outputs> 38 </outputs>
33 39
34 <!-- [STRONGLY RECOMMANDED] Exit code rules -->
35 <stdio>
36 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
37 <exit_code range="1:" level="fatal" />
38 </stdio>
39
40 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> 40 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
41 <tests> 41 <tests>
42 <!-- [HELP] Test files have to be in the ~/test-data directory --> 42 <!-- [HELP] Test files have to be in the ~/test-data directory -->
43 <test> 43 <test>
44 <param name="filein" value="sample.ped" /> 44 <param name="filein" value="ped2fasta-sample.ped" />
45 <output name="fileout" file="result.fa" /> 45 <output name="fileout" file="ped2fasta-result.fa" />
46 </test> 46 </test>
47 </tests> 47 </tests>
48 48
49 <!-- [OPTIONAL] Help displayed in Galaxy --> 49 <!-- [OPTIONAL] Help displayed in Galaxy -->
50 <help> 50 <help>