Mercurial > repos > dereeper > sniplay
comparison hapmap2mlmm/HapmapToMLMMFiles.xml @ 4:10627af23f10 draft
planemo upload
| author | gandres |
|---|---|
| date | Tue, 15 Dec 2015 05:18:02 -0500 |
| parents | 420b57c3c185 |
| children |
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| 3:345f88a8f483 | 4:10627af23f10 |
|---|---|
| 1 <tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="1.1"> | 1 <tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="1.1"> |
| 2 <description>converts a hapmap file into MLMM input files</description> | 2 <description>converts a hapmap file into MLMM input files</description> |
| 3 <command interpreter="bash">./HapmapToMLMMFiles.sh $input $snp_info $genot | 3 <!-- [STRONGLY RECOMMANDED] Exit code rules --> |
| 4 <stdio> | |
| 5 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR --> | |
| 6 <exit_code range="1:" level="fatal" /> | |
| 7 </stdio> | |
| 8 <command interpreter="bash">./HapmapToMLMMFiles.sh $input $snp_info $genot | |
| 4 </command> | 9 </command> |
| 5 <inputs> | 10 <inputs> |
| 6 <param format="txt" name="input" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/> | 11 <param format="txt" name="input" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/> |
| 7 </inputs> | 12 </inputs> |
| 8 <outputs> | 13 <outputs> |
| 9 <data format="txt" name="snp_info" label="SNP Info file"/> | 14 <data format="txt" name="snp_info" label="SNP Info file"/> |
| 10 <data format="txt" name="genot" label="Genotyping file for MLMM"/> | 15 <data format="txt" name="genot" label="Genotyping file for MLMM"/> |
| 11 </outputs> | 16 </outputs> |
| 12 <!-- [STRONGLY RECOMMANDED] Exit code rules --> | |
| 13 <stdio> | |
| 14 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR --> | |
| 15 <exit_code range="1:" level="fatal" /> | |
| 16 </stdio> | |
| 17 | 17 |
| 18 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> | 18 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> |
| 19 <tests> | 19 <tests> |
| 20 <!-- [HELP] Test files have to be in the ~/test-data directory --> | 20 <!-- [HELP] Test files have to be in the ~/test-data directory --> |
| 21 <!-- [HELP] Multiple tests can be defined with different parameters --> | 21 <!-- [HELP] Multiple tests can be defined with different parameters --> |
| 22 <!-- | 22 |
| 23 <test> | 23 <test> |
| 24 <param name="input" value="hapmap2mlmm-hapmap" /> | |
| 25 <output name="snp_info" file="hapmap2mlmm-result_snp.hapmap" /> | |
| 26 <output name="genot" file="hapmap2mlmm-result_genot" /> | |
| 24 </test> | 27 </test> |
| 25 --> | |
| 26 </tests> | 28 </tests> |
| 27 <help> | 29 <help> |
| 28 | 30 |
| 29 | 31 |
| 30 | 32 |