diff hapmap2mlmm/HapmapToMLMMFiles.xml @ 4:10627af23f10 draft

planemo upload

--- a/hapmap2mlmm/HapmapToMLMMFiles.xml	Fri Jul 10 10:38:43 2015 -0400
+++ b/hapmap2mlmm/HapmapToMLMMFiles.xml	Tue Dec 15 05:18:02 2015 -0500
@@ -1,6 +1,11 @@
 <tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="1.1">
-	<description>converts a hapmap file into MLMM input files</description>
-	<command interpreter="bash">./HapmapToMLMMFiles.sh $input $snp_info $genot
+    <description>converts a hapmap file into MLMM input files</description>
+    <!-- [STRONGLY RECOMMANDED] Exit code rules -->
+    <stdio>
+        <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
+        <exit_code range="1:" level="fatal" />
+    </stdio>
+    <command interpreter="bash">./HapmapToMLMMFiles.sh $input $snp_info $genot
     </command>
 	<inputs>
 		<param format="txt" name="input" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/>
@@ -9,20 +14,17 @@
 		<data format="txt" name="snp_info" label="SNP Info file"/>
 		<data format="txt" name="genot" label="Genotyping file for MLMM"/>
 	</outputs>
-    <!-- [STRONGLY RECOMMANDED] Exit code rules -->
-    <stdio>
-        <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
-        <exit_code range="1:" level="fatal" />
-    </stdio>
     
     <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
     <tests>
         <!-- [HELP] Test files have to be in the ~/test-data directory -->
         <!-- [HELP] Multiple tests can be defined with different parameters -->
-<!--
+
         <test>
+            <param name="input" value="hapmap2mlmm-hapmap" />
+            <output name="snp_info" file="hapmap2mlmm-result_snp.hapmap" />
+	    <output name="genot" file="hapmap2mlmm-result_genot" />
         </test>
--->
     </tests>
 	<help>