Mercurial > repos > dereeper > sniplay

diff SNP_density/calculateSlidingWindowsSNPdensitiesFromHapmap.sh @ 1:420b57c3c185 draft

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author dereeper
date Fri, 10 Jul 2015 04:39:30 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SNP_density/calculateSlidingWindowsSNPdensitiesFromHapmap.sh	Fri Jul 10 04:39:30 2015 -0400
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+tool_path=$(dirname $0)
+hapmap=$1
+fileout=$2
+fileout_bysample=$3
+step=$4
+
+perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromHapmap.pl -i $hapmap -o $fileout -s $step
+
+cp  $fileout.by_sample $fileout_bysample
+rm $fileout.by_sample
+