Mercurial > repos > dereeper > sniplay
view MDSplot/mdsplot.sh @ 8:6bf69b40365c draft
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author | dereeper |
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date | Wed, 07 Feb 2018 21:37:59 -0500 |
parents | 10627af23f10 |
children |
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#!/bin/bash tool_path=$(dirname $0) ped=$1 map=$2 fileout_label=$(date "+%Y%m%d%H%M%S") fileout_matrix=$3 fileout_plot=$4 fileout_log=$5 groups=$6 rsync -a $ped input.ped rsync -a $map input.map if [ -f $groups ] then cp -rf $groups input.individual_info.txt fi perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label rm -f input.ped input.map cp $fileout_label.ibs_matrix.txt $fileout_matrix cp $fileout_label.mds_plot.txt $fileout_plot cp input.plink.log $fileout_log rm -f $fileout_label.ibs_matrix.txt $fileout_label.mds_plot.txt input.plink.log