Mercurial > repos > dereeper > sniplay3
annotate VCFToolFilter/test-data/result.log @ 5:8d2d0b6c3521 draft
Uploaded
| author | dereeper |
|---|---|
| date | Fri, 20 Feb 2015 10:52:02 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 5 | 1 |
| 2 VCFtools - v0.1.12b | |
| 3 (C) Adam Auton and Anthony Marcketta 2009 | |
| 4 | |
| 5 Parameters as interpreted: | |
| 6 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat | |
| 7 --chr chr1 | |
| 8 --recode-INFO-all | |
| 9 --maf 0.001 | |
| 10 --max-alleles 4 | |
| 11 --max-maf 0.5 | |
| 12 --min-alleles 2 | |
| 13 --max-missing 1 | |
| 14 --out filtered | |
| 15 --recode | |
| 16 --remove-filtered-all | |
| 17 | |
| 18 After filtering, kept 1 out of 1 Individuals | |
| 19 Outputting VCF file... | |
| 20 After filtering, kept 3616 out of a possible 4955 Sites | |
| 21 Run Time = 0.00 seconds |