annotate Galaxy-Workflow-SNiPlay.ga @ 2:0c7db2dca8b4 draft default tip

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date Tue, 14 Aug 2018 09:37:46 -0400
parents 0bf2b08766d9
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "",
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4 "format-version": "0.2",
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5 "name": "SNiPlay Workflow",
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6 "steps": {
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14 "label": "Input VCF",
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15 "name": "Input dataset",
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35 "label": "Input Fasta Reference",
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36 "name": "Input dataset",
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37 "outputs": [],
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43 "tool_state": "{}",
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45 "type": "data_input",
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56 "label": "Input GFF Annotation",
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57 "name": "Input dataset",
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66 "type": "data_input",
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68 "workflow_outputs": []
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69 },
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78 "output_name": "output"
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79 }
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80 },
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82 {
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83 "description": "runtime parameter for tool VCFtools Filter",
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85 }
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86 ],
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87 "label": null,
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88 "name": "VCFtools Filter",
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89 "outputs": [
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90 {
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91 "name": "fileout",
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92 "type": "vcf"
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93 },
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94 {
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95 "name": "fileout_map",
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96 "type": "tabular"
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97 },
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98 {
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99 "name": "filelog",
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101 }
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106 },
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108 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
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109 "tool_shed_repository": {
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111 "name": "vcftools_filter_stats_diversity",
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112 "owner": "dereeper",
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113 "tool_shed": "toolshed.g2.bx.psu.edu"
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114 },
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115 "tool_state": "{\"nb_alleles_min\": \"\\\"2\\\"\", \"chromosomes\": \"\\\"\\\"\", \"__page__\": null, \"nb_alleles_max\": \"\\\"4\\\"\", \"type_p\": \"\\\"ALL\\\"\", \"allow_missing\": \"\\\"0.0\\\"\", \"fileout_label\": \"\\\"filtered\\\"\", \"frequency\": \"\\\"0.001\\\"\", \"export\": \"\\\"VCF\\\"\", \"samples\": \"\\\"\\\"\", \"bound_end\": \"\\\"100000000\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_freq\": \"\\\"0.5\\\"\", \"__rerun_remap_job_id__\": null, \"bound_start\": \"\\\"1\\\"\"}",
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116 "tool_version": "2.0.0",
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117 "type": "tool",
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118 "uuid": "46ae7024-01b1-4f7c-a98a-7120fcc5a100",
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119 "workflow_outputs": []
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120 },
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851 "output_name": "outputTree"
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879 "tool_state": "{\"fileout_label\": \"\\\"out tree\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"values\\\": [{\\\"src\\\": \\\"hda\\\", \\\"id\\\": 36319}]}\"}",
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880 "tool_version": "2.0.0",
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881 "type": "tool",
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