Mercurial > repos > devteam > analyze_covariates
comparison test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.csv @ 0:be6bede22459 draft
Imported from capsule None
author | devteam |
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date | Tue, 01 Apr 2014 10:48:14 -0400 |
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-1:000000000000 | 0:be6bede22459 |
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1 # Counted Sites 41 | |
2 # Counted Bases 340 | |
3 # Skipped Sites 2 | |
4 # Fraction Skipped 1 / 21 bp | |
5 ReadGroup,QualityScore,Cycle,Dinuc,Homopolymer,MinimumNQS,Position,nObservations,nMismatches,Qempirical | |
6 A Fake phiX Sample,26,1,NN,0,26,0,9,0,40 | |
7 A Fake phiX Sample,26,1,NN,1,26,0,1,0,40 | |
8 A Fake phiX Sample,26,2,AG,0,26,1,1,0,40 | |
9 A Fake phiX Sample,26,2,CC,0,26,1,1,0,40 | |
10 A Fake phiX Sample,26,2,CG,0,26,1,3,0,40 | |
11 A Fake phiX Sample,26,2,GC,0,26,1,2,0,40 | |
12 A Fake phiX Sample,26,2,GC,1,26,1,1,0,40 | |
13 A Fake phiX Sample,26,2,GT,0,26,1,1,0,40 | |
14 A Fake phiX Sample,26,2,TG,1,26,1,1,0,40 | |
15 A Fake phiX Sample,26,3,CC,0,26,2,1,0,40 | |
16 A Fake phiX Sample,26,3,CG,0,26,2,3,0,40 | |
17 A Fake phiX Sample,26,3,GC,0,26,2,1,0,40 | |
18 A Fake phiX Sample,26,3,GC,1,26,2,2,0,40 | |
19 A Fake phiX Sample,26,3,GG,0,26,2,1,0,40 | |
20 A Fake phiX Sample,26,3,GT,0,26,2,1,0,40 | |
21 A Fake phiX Sample,26,3,TG,1,26,2,1,0,40 | |
22 A Fake phiX Sample,26,4,CC,0,26,3,2,0,40 | |
23 A Fake phiX Sample,26,4,CG,0,26,3,2,0,40 | |
24 A Fake phiX Sample,26,4,GA,0,26,3,1,0,40 | |
25 A Fake phiX Sample,26,4,GC,1,26,3,2,0,40 | |
26 A Fake phiX Sample,26,4,GG,0,26,3,1,0,40 | |
27 A Fake phiX Sample,26,4,GT,0,26,3,1,0,40 | |
28 A Fake phiX Sample,26,4,TG,1,26,3,1,0,40 | |
29 A Fake phiX Sample,26,5,AT,0,26,4,1,0,40 | |
30 A Fake phiX Sample,26,5,CC,0,26,4,2,0,40 | |
31 A Fake phiX Sample,26,5,CG,0,26,4,2,0,40 | |
32 A Fake phiX Sample,26,5,GA,0,26,4,1,0,40 | |
33 A Fake phiX Sample,26,5,GC,1,26,4,1,0,40 | |
34 A Fake phiX Sample,26,5,GG,0,26,4,1,0,40 | |
35 A Fake phiX Sample,26,5,GT,0,26,4,1,0,40 | |
36 A Fake phiX Sample,26,5,TG,1,26,4,1,0,40 | |
37 A Fake phiX Sample,26,6,AT,0,26,5,1,0,40 | |
38 A Fake phiX Sample,26,6,CC,0,26,5,1,0,40 | |
39 A Fake phiX Sample,26,6,CG,0,26,5,2,0,40 | |
40 A Fake phiX Sample,26,6,GA,0,26,5,1,0,40 | |
41 A Fake phiX Sample,26,6,GG,0,26,5,1,0,40 | |
42 A Fake phiX Sample,26,6,GT,0,26,5,2,0,40 | |
43 A Fake phiX Sample,26,6,TG,0,26,5,1,0,40 | |
44 A Fake phiX Sample,26,6,TG,1,26,5,1,0,40 | |
45 A Fake phiX Sample,26,7,AT,0,26,6,1,0,40 | |
46 A Fake phiX Sample,26,7,CG,0,26,6,1,0,40 | |
47 A Fake phiX Sample,26,7,GA,0,26,6,2,1,3 | |
48 A Fake phiX Sample,26,7,GG,0,26,6,1,0,40 | |
49 A Fake phiX Sample,26,7,GT,0,26,6,2,0,40 | |
50 A Fake phiX Sample,26,7,TG,0,26,6,1,0,40 | |
51 A Fake phiX Sample,26,7,TG,1,26,6,2,0,40 | |
52 A Fake phiX Sample,26,8,AC,0,26,7,1,0,40 | |
53 A Fake phiX Sample,26,8,AT,0,26,7,1,0,40 | |
54 A Fake phiX Sample,26,8,GA,0,26,7,2,1,3 | |
55 A Fake phiX Sample,26,8,GG,0,26,7,2,0,40 | |
56 A Fake phiX Sample,26,8,GT,0,26,7,1,0,40 | |
57 A Fake phiX Sample,26,8,TG,0,26,7,1,0,40 | |
58 A Fake phiX Sample,26,8,TG,1,26,7,2,0,40 | |
59 A Fake phiX Sample,26,9,AC,0,26,8,1,0,40 | |
60 A Fake phiX Sample,26,9,AT,0,26,8,1,0,40 | |
61 A Fake phiX Sample,26,9,CT,0,26,8,1,0,40 | |
62 A Fake phiX Sample,26,9,GA,0,26,8,3,1,5 | |
63 A Fake phiX Sample,26,9,GG,0,26,8,2,0,40 | |
64 A Fake phiX Sample,26,9,TG,0,26,8,1,0,40 | |
65 A Fake phiX Sample,26,9,TG,1,26,8,1,0,40 | |
66 A Fake phiX Sample,26,10,AC,0,26,9,1,0,40 | |
67 A Fake phiX Sample,26,10,AT,0,26,9,2,0,40 | |
68 A Fake phiX Sample,26,10,CT,0,26,9,1,0,40 | |
69 A Fake phiX Sample,26,10,GA,0,26,9,3,1,5 | |
70 A Fake phiX Sample,26,10,GG,0,26,9,1,0,40 | |
71 A Fake phiX Sample,26,10,TG,0,26,9,2,0,40 | |
72 A Fake phiX Sample,26,11,AC,0,26,10,1,0,40 | |
73 A Fake phiX Sample,26,11,AT,0,26,10,2,0,40 | |
74 A Fake phiX Sample,26,11,CT,0,26,10,1,0,40 | |
75 A Fake phiX Sample,26,11,GA,0,26,10,3,1,5 | |
76 A Fake phiX Sample,26,11,TG,0,26,10,3,0,40 | |
77 A Fake phiX Sample,26,12,AC,0,26,11,1,0,40 | |
78 A Fake phiX Sample,26,12,AC,1,26,11,1,0,40 | |
79 A Fake phiX Sample,26,12,AT,0,26,11,1,0,40 | |
80 A Fake phiX Sample,26,12,CT,0,26,11,1,0,40 | |
81 A Fake phiX Sample,26,12,GA,0,26,11,2,1,3 | |
82 A Fake phiX Sample,26,12,GC,1,26,11,1,0,40 | |
83 A Fake phiX Sample,26,12,TG,0,26,11,3,0,40 | |
84 A Fake phiX Sample,26,13,AC,0,26,12,1,0,40 | |
85 A Fake phiX Sample,26,13,AC,1,26,12,1,0,40 | |
86 A Fake phiX Sample,26,13,CC,0,26,12,2,0,40 | |
87 A Fake phiX Sample,26,13,CT,0,26,12,1,0,40 | |
88 A Fake phiX Sample,26,13,GA,0,26,12,2,1,3 | |
89 A Fake phiX Sample,26,13,GC,1,26,12,1,0,40 | |
90 A Fake phiX Sample,26,13,TG,0,26,12,2,0,40 | |
91 A Fake phiX Sample,26,14,AC,0,26,13,1,0,40 | |
92 A Fake phiX Sample,26,14,AC,1,26,13,1,0,40 | |
93 A Fake phiX Sample,26,14,CC,0,26,13,2,0,40 | |
94 A Fake phiX Sample,26,14,CG,0,26,13,1,0,40 | |
95 A Fake phiX Sample,26,14,CT,0,26,13,2,0,40 | |
96 A Fake phiX Sample,26,14,GA,0,26,13,1,0,40 | |
97 A Fake phiX Sample,26,14,GC,1,26,13,1,0,40 | |
98 A Fake phiX Sample,26,14,TG,0,26,13,1,0,40 | |
99 A Fake phiX Sample,26,15,AC,1,26,14,1,0,40 | |
100 A Fake phiX Sample,26,15,CC,0,26,14,2,0,40 | |
101 A Fake phiX Sample,26,15,CG,0,26,14,1,0,40 | |
102 A Fake phiX Sample,26,15,CT,0,26,14,2,0,40 | |
103 A Fake phiX Sample,26,15,GA,0,26,14,1,0,40 | |
104 A Fake phiX Sample,26,15,GT,0,26,14,1,0,40 | |
105 A Fake phiX Sample,26,15,TG,0,26,14,2,0,40 | |
106 A Fake phiX Sample,26,16,AC,1,26,15,1,0,40 | |
107 A Fake phiX Sample,26,16,CC,0,26,15,1,0,40 | |
108 A Fake phiX Sample,26,16,CG,0,26,15,1,0,40 | |
109 A Fake phiX Sample,26,16,CT,0,26,15,1,0,40 | |
110 A Fake phiX Sample,26,16,GA,0,26,15,2,0,40 | |
111 A Fake phiX Sample,26,16,GT,0,26,15,1,0,40 | |
112 A Fake phiX Sample,26,16,TA,0,26,15,1,0,40 | |
113 A Fake phiX Sample,26,16,TG,0,26,15,2,0,40 | |
114 A Fake phiX Sample,26,17,AC,1,26,16,3,0,40 | |
115 A Fake phiX Sample,26,17,CC,0,26,16,1,0,40 | |
116 A Fake phiX Sample,26,17,CG,0,26,16,1,0,40 | |
117 A Fake phiX Sample,26,17,GA,0,26,16,2,0,40 | |
118 A Fake phiX Sample,26,17,GT,0,26,16,1,0,40 | |
119 A Fake phiX Sample,26,17,TA,0,26,16,1,0,40 | |
120 A Fake phiX Sample,26,17,TG,0,26,16,1,0,40 | |
121 A Fake phiX Sample,26,18,AC,1,26,17,3,0,40 | |
122 A Fake phiX Sample,26,18,CC,0,26,17,3,0,40 | |
123 A Fake phiX Sample,26,18,CG,0,26,17,1,0,40 | |
124 A Fake phiX Sample,26,18,GA,0,26,17,1,0,40 | |
125 A Fake phiX Sample,26,18,GT,0,26,17,1,0,40 | |
126 A Fake phiX Sample,26,18,TA,0,26,17,1,0,40 | |
127 A Fake phiX Sample,26,19,AC,1,26,18,2,0,40 | |
128 A Fake phiX Sample,26,19,CC,0,26,18,3,0,40 | |
129 A Fake phiX Sample,26,19,CG,0,26,18,3,0,40 | |
130 A Fake phiX Sample,26,19,GT,0,26,18,1,0,40 | |
131 A Fake phiX Sample,26,19,TA,0,26,18,1,0,40 | |
132 A Fake phiX Sample,26,20,AC,1,26,19,1,0,40 | |
133 A Fake phiX Sample,26,20,CC,0,26,19,2,0,40 | |
134 A Fake phiX Sample,26,20,CG,0,26,19,3,0,40 | |
135 A Fake phiX Sample,26,20,GA,0,26,19,1,0,40 | |
136 A Fake phiX Sample,26,20,GT,0,26,19,2,0,40 | |
137 A Fake phiX Sample,26,20,TA,0,26,19,1,0,40 | |
138 A Fake phiX Sample,26,21,AC,1,26,20,1,0,40 | |
139 A Fake phiX Sample,26,21,AG,1,26,20,1,0,40 | |
140 A Fake phiX Sample,26,21,CC,0,26,20,1,0,40 | |
141 A Fake phiX Sample,26,21,CG,0,26,20,2,0,40 | |
142 A Fake phiX Sample,26,21,GA,0,26,20,1,0,40 | |
143 A Fake phiX Sample,26,21,GT,0,26,20,2,0,40 | |
144 A Fake phiX Sample,26,21,TA,0,26,20,2,0,40 | |
145 A Fake phiX Sample,26,22,AC,1,26,21,2,0,40 | |
146 A Fake phiX Sample,26,22,AG,1,26,21,1,0,40 | |
147 A Fake phiX Sample,26,22,CC,0,26,21,1,0,40 | |
148 A Fake phiX Sample,26,22,CG,0,26,21,1,0,40 | |
149 A Fake phiX Sample,26,22,GA,0,26,21,1,0,40 | |
150 A Fake phiX Sample,26,22,GG,0,26,21,1,0,40 | |
151 A Fake phiX Sample,26,22,GT,0,26,21,1,0,40 | |
152 A Fake phiX Sample,26,22,TA,0,26,21,2,0,40 | |
153 A Fake phiX Sample,26,23,AC,1,26,22,2,0,40 | |
154 A Fake phiX Sample,26,23,AG,1,26,22,1,0,40 | |
155 A Fake phiX Sample,26,23,CC,0,26,22,2,0,40 | |
156 A Fake phiX Sample,26,23,CG,0,26,22,1,0,40 | |
157 A Fake phiX Sample,26,23,GA,0,26,22,1,0,40 | |
158 A Fake phiX Sample,26,23,GC,0,26,22,1,0,40 | |
159 A Fake phiX Sample,26,23,GG,0,26,22,1,0,40 | |
160 A Fake phiX Sample,26,23,TA,0,26,22,1,0,40 | |
161 A Fake phiX Sample,26,24,AC,1,26,23,1,0,40 | |
162 A Fake phiX Sample,26,24,AG,1,26,23,1,0,40 | |
163 A Fake phiX Sample,26,24,CC,0,26,23,2,0,40 | |
164 A Fake phiX Sample,26,24,CG,0,26,23,2,0,40 | |
165 A Fake phiX Sample,26,24,CT,0,26,23,1,0,40 | |
166 A Fake phiX Sample,26,24,GA,0,26,23,1,0,40 | |
167 A Fake phiX Sample,26,24,GC,0,26,23,1,0,40 | |
168 A Fake phiX Sample,26,24,GG,0,26,23,1,0,40 | |
169 A Fake phiX Sample,26,25,AG,1,26,24,1,0,40 | |
170 A Fake phiX Sample,26,25,CC,0,26,24,1,0,40 | |
171 A Fake phiX Sample,26,25,CG,0,26,24,2,0,40 | |
172 A Fake phiX Sample,26,25,CT,0,26,24,1,0,40 | |
173 A Fake phiX Sample,26,25,GA,0,26,24,2,0,40 | |
174 A Fake phiX Sample,26,25,GC,0,26,24,1,0,40 | |
175 A Fake phiX Sample,26,25,GG,0,26,24,1,0,40 | |
176 A Fake phiX Sample,26,25,TA,1,26,24,1,0,40 | |
177 A Fake phiX Sample,26,26,AG,1,26,25,2,0,40 | |
178 A Fake phiX Sample,26,26,CG,0,26,25,1,0,40 | |
179 A Fake phiX Sample,26,26,CT,0,26,25,1,0,40 | |
180 A Fake phiX Sample,26,26,GA,0,26,25,2,0,40 | |
181 A Fake phiX Sample,26,26,GC,0,26,25,1,0,40 | |
182 A Fake phiX Sample,26,26,GG,0,26,25,1,0,40 | |
183 A Fake phiX Sample,26,26,TA,1,26,25,1,0,40 | |
184 A Fake phiX Sample,26,27,AC,2,26,26,1,0,40 | |
185 A Fake phiX Sample,26,27,AG,1,26,26,2,0,40 | |
186 A Fake phiX Sample,26,27,CT,0,26,26,1,0,40 | |
187 A Fake phiX Sample,26,27,GA,0,26,26,1,0,40 | |
188 A Fake phiX Sample,26,27,GC,0,26,26,1,0,40 | |
189 A Fake phiX Sample,26,27,GG,0,26,26,2,0,40 | |
190 A Fake phiX Sample,26,27,TA,1,26,26,1,0,40 | |
191 A Fake phiX Sample,26,28,AC,2,26,27,1,0,40 | |
192 A Fake phiX Sample,26,28,AG,1,26,27,1,0,40 | |
193 A Fake phiX Sample,26,28,CC,1,26,27,1,0,40 | |
194 A Fake phiX Sample,26,28,CT,0,26,27,1,0,40 | |
195 A Fake phiX Sample,26,28,GC,0,26,27,2,0,40 | |
196 A Fake phiX Sample,26,28,GG,0,26,27,2,0,40 | |
197 A Fake phiX Sample,26,28,TA,1,26,27,1,0,40 | |
198 A Fake phiX Sample,26,29,AC,2,26,28,1,0,40 | |
199 A Fake phiX Sample,26,29,CC,1,26,28,1,0,40 | |
200 A Fake phiX Sample,26,29,CT,0,26,28,2,0,40 | |
201 A Fake phiX Sample,26,29,GC,0,26,28,2,0,40 | |
202 A Fake phiX Sample,26,29,GG,0,26,28,1,0,40 | |
203 A Fake phiX Sample,26,29,TA,1,26,28,1,0,40 | |
204 A Fake phiX Sample,26,30,AC,2,26,29,1,0,40 | |
205 A Fake phiX Sample,26,30,CC,1,26,29,1,0,40 | |
206 A Fake phiX Sample,26,30,CT,0,26,29,3,0,40 | |
207 A Fake phiX Sample,26,30,GC,0,26,29,1,0,40 | |
208 A Fake phiX Sample,26,30,TA,1,26,29,2,0,40 | |
209 A Fake phiX Sample,26,31,AC,2,26,30,1,0,40 | |
210 A Fake phiX Sample,26,31,CC,1,26,30,1,0,40 | |
211 A Fake phiX Sample,26,31,CT,0,26,30,2,0,40 | |
212 A Fake phiX Sample,26,31,TA,1,26,30,3,0,40 | |
213 A Fake phiX Sample,26,32,AA,0,26,31,1,0,40 | |
214 A Fake phiX Sample,26,32,AC,1,26,31,1,0,40 | |
215 A Fake phiX Sample,26,32,AC,2,26,31,1,0,40 | |
216 A Fake phiX Sample,26,32,CC,1,26,31,1,0,40 | |
217 A Fake phiX Sample,26,32,CT,0,26,31,1,0,40 | |
218 A Fake phiX Sample,26,32,TA,1,26,31,2,0,40 | |
219 A Fake phiX Sample,26,33,AA,0,26,32,1,0,40 | |
220 A Fake phiX Sample,26,33,AC,1,26,32,1,0,40 | |
221 A Fake phiX Sample,26,33,AC,2,26,32,1,0,40 | |
222 A Fake phiX Sample,26,33,AT,0,26,32,1,0,40 | |
223 A Fake phiX Sample,26,33,CC,1,26,32,1,0,40 | |
224 A Fake phiX Sample,26,33,CT,0,26,32,1,0,40 | |
225 A Fake phiX Sample,26,33,TA,1,26,32,1,0,40 | |
226 A Fake phiX Sample,26,34,AA,0,26,33,1,0,40 | |
227 A Fake phiX Sample,26,34,AC,1,26,33,1,0,40 | |
228 A Fake phiX Sample,26,34,AT,0,26,33,1,0,40 | |
229 A Fake phiX Sample,26,34,CC,1,26,33,1,0,40 | |
230 A Fake phiX Sample,26,34,CT,0,26,33,2,0,40 | |
231 A Fake phiX Sample,26,34,TA,1,26,33,1,0,40 | |
232 A Fake phiX Sample,26,34,TG,0,26,33,1,0,40 | |
233 A Fake phiX Sample,26,35,AA,0,26,34,1,0,40 | |
234 A Fake phiX Sample,26,35,AT,0,26,34,1,0,40 | |
235 A Fake phiX Sample,26,35,CT,0,26,34,2,0,40 | |
236 A Fake phiX Sample,26,35,GA,0,26,34,1,0,40 | |
237 A Fake phiX Sample,26,35,TA,1,26,34,2,0,40 | |
238 A Fake phiX Sample,26,35,TG,0,26,34,1,0,40 | |
239 A Fake phiX Sample,26,36,AA,0,26,35,2,0,40 | |
240 A Fake phiX Sample,26,36,AG,0,26,35,1,0,40 | |
241 A Fake phiX Sample,26,36,AT,0,26,35,1,0,40 | |
242 A Fake phiX Sample,26,36,CT,0,26,35,2,0,40 | |
243 A Fake phiX Sample,26,36,GA,0,26,35,1,0,40 | |
244 A Fake phiX Sample,26,36,TA,0,26,35,2,0,40 | |
245 A Fake phiX Sample,26,36,TG,0,26,35,1,0,40 | |
246 EOF |