view test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.csv @ 0:be6bede22459 draft

Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:48:14 -0400
parents
children
line wrap: on
line source

# Counted Sites    41
# Counted Bases    340
# Skipped Sites    2
# Fraction Skipped 1 / 21 bp
ReadGroup,QualityScore,Cycle,Dinuc,Homopolymer,MinimumNQS,Position,nObservations,nMismatches,Qempirical
A Fake phiX Sample,26,1,NN,0,26,0,9,0,40
A Fake phiX Sample,26,1,NN,1,26,0,1,0,40
A Fake phiX Sample,26,2,AG,0,26,1,1,0,40
A Fake phiX Sample,26,2,CC,0,26,1,1,0,40
A Fake phiX Sample,26,2,CG,0,26,1,3,0,40
A Fake phiX Sample,26,2,GC,0,26,1,2,0,40
A Fake phiX Sample,26,2,GC,1,26,1,1,0,40
A Fake phiX Sample,26,2,GT,0,26,1,1,0,40
A Fake phiX Sample,26,2,TG,1,26,1,1,0,40
A Fake phiX Sample,26,3,CC,0,26,2,1,0,40
A Fake phiX Sample,26,3,CG,0,26,2,3,0,40
A Fake phiX Sample,26,3,GC,0,26,2,1,0,40
A Fake phiX Sample,26,3,GC,1,26,2,2,0,40
A Fake phiX Sample,26,3,GG,0,26,2,1,0,40
A Fake phiX Sample,26,3,GT,0,26,2,1,0,40
A Fake phiX Sample,26,3,TG,1,26,2,1,0,40
A Fake phiX Sample,26,4,CC,0,26,3,2,0,40
A Fake phiX Sample,26,4,CG,0,26,3,2,0,40
A Fake phiX Sample,26,4,GA,0,26,3,1,0,40
A Fake phiX Sample,26,4,GC,1,26,3,2,0,40
A Fake phiX Sample,26,4,GG,0,26,3,1,0,40
A Fake phiX Sample,26,4,GT,0,26,3,1,0,40
A Fake phiX Sample,26,4,TG,1,26,3,1,0,40
A Fake phiX Sample,26,5,AT,0,26,4,1,0,40
A Fake phiX Sample,26,5,CC,0,26,4,2,0,40
A Fake phiX Sample,26,5,CG,0,26,4,2,0,40
A Fake phiX Sample,26,5,GA,0,26,4,1,0,40
A Fake phiX Sample,26,5,GC,1,26,4,1,0,40
A Fake phiX Sample,26,5,GG,0,26,4,1,0,40
A Fake phiX Sample,26,5,GT,0,26,4,1,0,40
A Fake phiX Sample,26,5,TG,1,26,4,1,0,40
A Fake phiX Sample,26,6,AT,0,26,5,1,0,40
A Fake phiX Sample,26,6,CC,0,26,5,1,0,40
A Fake phiX Sample,26,6,CG,0,26,5,2,0,40
A Fake phiX Sample,26,6,GA,0,26,5,1,0,40
A Fake phiX Sample,26,6,GG,0,26,5,1,0,40
A Fake phiX Sample,26,6,GT,0,26,5,2,0,40
A Fake phiX Sample,26,6,TG,0,26,5,1,0,40
A Fake phiX Sample,26,6,TG,1,26,5,1,0,40
A Fake phiX Sample,26,7,AT,0,26,6,1,0,40
A Fake phiX Sample,26,7,CG,0,26,6,1,0,40
A Fake phiX Sample,26,7,GA,0,26,6,2,1,3
A Fake phiX Sample,26,7,GG,0,26,6,1,0,40
A Fake phiX Sample,26,7,GT,0,26,6,2,0,40
A Fake phiX Sample,26,7,TG,0,26,6,1,0,40
A Fake phiX Sample,26,7,TG,1,26,6,2,0,40
A Fake phiX Sample,26,8,AC,0,26,7,1,0,40
A Fake phiX Sample,26,8,AT,0,26,7,1,0,40
A Fake phiX Sample,26,8,GA,0,26,7,2,1,3
A Fake phiX Sample,26,8,GG,0,26,7,2,0,40
A Fake phiX Sample,26,8,GT,0,26,7,1,0,40
A Fake phiX Sample,26,8,TG,0,26,7,1,0,40
A Fake phiX Sample,26,8,TG,1,26,7,2,0,40
A Fake phiX Sample,26,9,AC,0,26,8,1,0,40
A Fake phiX Sample,26,9,AT,0,26,8,1,0,40
A Fake phiX Sample,26,9,CT,0,26,8,1,0,40
A Fake phiX Sample,26,9,GA,0,26,8,3,1,5
A Fake phiX Sample,26,9,GG,0,26,8,2,0,40
A Fake phiX Sample,26,9,TG,0,26,8,1,0,40
A Fake phiX Sample,26,9,TG,1,26,8,1,0,40
A Fake phiX Sample,26,10,AC,0,26,9,1,0,40
A Fake phiX Sample,26,10,AT,0,26,9,2,0,40
A Fake phiX Sample,26,10,CT,0,26,9,1,0,40
A Fake phiX Sample,26,10,GA,0,26,9,3,1,5
A Fake phiX Sample,26,10,GG,0,26,9,1,0,40
A Fake phiX Sample,26,10,TG,0,26,9,2,0,40
A Fake phiX Sample,26,11,AC,0,26,10,1,0,40
A Fake phiX Sample,26,11,AT,0,26,10,2,0,40
A Fake phiX Sample,26,11,CT,0,26,10,1,0,40
A Fake phiX Sample,26,11,GA,0,26,10,3,1,5
A Fake phiX Sample,26,11,TG,0,26,10,3,0,40
A Fake phiX Sample,26,12,AC,0,26,11,1,0,40
A Fake phiX Sample,26,12,AC,1,26,11,1,0,40
A Fake phiX Sample,26,12,AT,0,26,11,1,0,40
A Fake phiX Sample,26,12,CT,0,26,11,1,0,40
A Fake phiX Sample,26,12,GA,0,26,11,2,1,3
A Fake phiX Sample,26,12,GC,1,26,11,1,0,40
A Fake phiX Sample,26,12,TG,0,26,11,3,0,40
A Fake phiX Sample,26,13,AC,0,26,12,1,0,40
A Fake phiX Sample,26,13,AC,1,26,12,1,0,40
A Fake phiX Sample,26,13,CC,0,26,12,2,0,40
A Fake phiX Sample,26,13,CT,0,26,12,1,0,40
A Fake phiX Sample,26,13,GA,0,26,12,2,1,3
A Fake phiX Sample,26,13,GC,1,26,12,1,0,40
A Fake phiX Sample,26,13,TG,0,26,12,2,0,40
A Fake phiX Sample,26,14,AC,0,26,13,1,0,40
A Fake phiX Sample,26,14,AC,1,26,13,1,0,40
A Fake phiX Sample,26,14,CC,0,26,13,2,0,40
A Fake phiX Sample,26,14,CG,0,26,13,1,0,40
A Fake phiX Sample,26,14,CT,0,26,13,2,0,40
A Fake phiX Sample,26,14,GA,0,26,13,1,0,40
A Fake phiX Sample,26,14,GC,1,26,13,1,0,40
A Fake phiX Sample,26,14,TG,0,26,13,1,0,40
A Fake phiX Sample,26,15,AC,1,26,14,1,0,40
A Fake phiX Sample,26,15,CC,0,26,14,2,0,40
A Fake phiX Sample,26,15,CG,0,26,14,1,0,40
A Fake phiX Sample,26,15,CT,0,26,14,2,0,40
A Fake phiX Sample,26,15,GA,0,26,14,1,0,40
A Fake phiX Sample,26,15,GT,0,26,14,1,0,40
A Fake phiX Sample,26,15,TG,0,26,14,2,0,40
A Fake phiX Sample,26,16,AC,1,26,15,1,0,40
A Fake phiX Sample,26,16,CC,0,26,15,1,0,40
A Fake phiX Sample,26,16,CG,0,26,15,1,0,40
A Fake phiX Sample,26,16,CT,0,26,15,1,0,40
A Fake phiX Sample,26,16,GA,0,26,15,2,0,40
A Fake phiX Sample,26,16,GT,0,26,15,1,0,40
A Fake phiX Sample,26,16,TA,0,26,15,1,0,40
A Fake phiX Sample,26,16,TG,0,26,15,2,0,40
A Fake phiX Sample,26,17,AC,1,26,16,3,0,40
A Fake phiX Sample,26,17,CC,0,26,16,1,0,40
A Fake phiX Sample,26,17,CG,0,26,16,1,0,40
A Fake phiX Sample,26,17,GA,0,26,16,2,0,40
A Fake phiX Sample,26,17,GT,0,26,16,1,0,40
A Fake phiX Sample,26,17,TA,0,26,16,1,0,40
A Fake phiX Sample,26,17,TG,0,26,16,1,0,40
A Fake phiX Sample,26,18,AC,1,26,17,3,0,40
A Fake phiX Sample,26,18,CC,0,26,17,3,0,40
A Fake phiX Sample,26,18,CG,0,26,17,1,0,40
A Fake phiX Sample,26,18,GA,0,26,17,1,0,40
A Fake phiX Sample,26,18,GT,0,26,17,1,0,40
A Fake phiX Sample,26,18,TA,0,26,17,1,0,40
A Fake phiX Sample,26,19,AC,1,26,18,2,0,40
A Fake phiX Sample,26,19,CC,0,26,18,3,0,40
A Fake phiX Sample,26,19,CG,0,26,18,3,0,40
A Fake phiX Sample,26,19,GT,0,26,18,1,0,40
A Fake phiX Sample,26,19,TA,0,26,18,1,0,40
A Fake phiX Sample,26,20,AC,1,26,19,1,0,40
A Fake phiX Sample,26,20,CC,0,26,19,2,0,40
A Fake phiX Sample,26,20,CG,0,26,19,3,0,40
A Fake phiX Sample,26,20,GA,0,26,19,1,0,40
A Fake phiX Sample,26,20,GT,0,26,19,2,0,40
A Fake phiX Sample,26,20,TA,0,26,19,1,0,40
A Fake phiX Sample,26,21,AC,1,26,20,1,0,40
A Fake phiX Sample,26,21,AG,1,26,20,1,0,40
A Fake phiX Sample,26,21,CC,0,26,20,1,0,40
A Fake phiX Sample,26,21,CG,0,26,20,2,0,40
A Fake phiX Sample,26,21,GA,0,26,20,1,0,40
A Fake phiX Sample,26,21,GT,0,26,20,2,0,40
A Fake phiX Sample,26,21,TA,0,26,20,2,0,40
A Fake phiX Sample,26,22,AC,1,26,21,2,0,40
A Fake phiX Sample,26,22,AG,1,26,21,1,0,40
A Fake phiX Sample,26,22,CC,0,26,21,1,0,40
A Fake phiX Sample,26,22,CG,0,26,21,1,0,40
A Fake phiX Sample,26,22,GA,0,26,21,1,0,40
A Fake phiX Sample,26,22,GG,0,26,21,1,0,40
A Fake phiX Sample,26,22,GT,0,26,21,1,0,40
A Fake phiX Sample,26,22,TA,0,26,21,2,0,40
A Fake phiX Sample,26,23,AC,1,26,22,2,0,40
A Fake phiX Sample,26,23,AG,1,26,22,1,0,40
A Fake phiX Sample,26,23,CC,0,26,22,2,0,40
A Fake phiX Sample,26,23,CG,0,26,22,1,0,40
A Fake phiX Sample,26,23,GA,0,26,22,1,0,40
A Fake phiX Sample,26,23,GC,0,26,22,1,0,40
A Fake phiX Sample,26,23,GG,0,26,22,1,0,40
A Fake phiX Sample,26,23,TA,0,26,22,1,0,40
A Fake phiX Sample,26,24,AC,1,26,23,1,0,40
A Fake phiX Sample,26,24,AG,1,26,23,1,0,40
A Fake phiX Sample,26,24,CC,0,26,23,2,0,40
A Fake phiX Sample,26,24,CG,0,26,23,2,0,40
A Fake phiX Sample,26,24,CT,0,26,23,1,0,40
A Fake phiX Sample,26,24,GA,0,26,23,1,0,40
A Fake phiX Sample,26,24,GC,0,26,23,1,0,40
A Fake phiX Sample,26,24,GG,0,26,23,1,0,40
A Fake phiX Sample,26,25,AG,1,26,24,1,0,40
A Fake phiX Sample,26,25,CC,0,26,24,1,0,40
A Fake phiX Sample,26,25,CG,0,26,24,2,0,40
A Fake phiX Sample,26,25,CT,0,26,24,1,0,40
A Fake phiX Sample,26,25,GA,0,26,24,2,0,40
A Fake phiX Sample,26,25,GC,0,26,24,1,0,40
A Fake phiX Sample,26,25,GG,0,26,24,1,0,40
A Fake phiX Sample,26,25,TA,1,26,24,1,0,40
A Fake phiX Sample,26,26,AG,1,26,25,2,0,40
A Fake phiX Sample,26,26,CG,0,26,25,1,0,40
A Fake phiX Sample,26,26,CT,0,26,25,1,0,40
A Fake phiX Sample,26,26,GA,0,26,25,2,0,40
A Fake phiX Sample,26,26,GC,0,26,25,1,0,40
A Fake phiX Sample,26,26,GG,0,26,25,1,0,40
A Fake phiX Sample,26,26,TA,1,26,25,1,0,40
A Fake phiX Sample,26,27,AC,2,26,26,1,0,40
A Fake phiX Sample,26,27,AG,1,26,26,2,0,40
A Fake phiX Sample,26,27,CT,0,26,26,1,0,40
A Fake phiX Sample,26,27,GA,0,26,26,1,0,40
A Fake phiX Sample,26,27,GC,0,26,26,1,0,40
A Fake phiX Sample,26,27,GG,0,26,26,2,0,40
A Fake phiX Sample,26,27,TA,1,26,26,1,0,40
A Fake phiX Sample,26,28,AC,2,26,27,1,0,40
A Fake phiX Sample,26,28,AG,1,26,27,1,0,40
A Fake phiX Sample,26,28,CC,1,26,27,1,0,40
A Fake phiX Sample,26,28,CT,0,26,27,1,0,40
A Fake phiX Sample,26,28,GC,0,26,27,2,0,40
A Fake phiX Sample,26,28,GG,0,26,27,2,0,40
A Fake phiX Sample,26,28,TA,1,26,27,1,0,40
A Fake phiX Sample,26,29,AC,2,26,28,1,0,40
A Fake phiX Sample,26,29,CC,1,26,28,1,0,40
A Fake phiX Sample,26,29,CT,0,26,28,2,0,40
A Fake phiX Sample,26,29,GC,0,26,28,2,0,40
A Fake phiX Sample,26,29,GG,0,26,28,1,0,40
A Fake phiX Sample,26,29,TA,1,26,28,1,0,40
A Fake phiX Sample,26,30,AC,2,26,29,1,0,40
A Fake phiX Sample,26,30,CC,1,26,29,1,0,40
A Fake phiX Sample,26,30,CT,0,26,29,3,0,40
A Fake phiX Sample,26,30,GC,0,26,29,1,0,40
A Fake phiX Sample,26,30,TA,1,26,29,2,0,40
A Fake phiX Sample,26,31,AC,2,26,30,1,0,40
A Fake phiX Sample,26,31,CC,1,26,30,1,0,40
A Fake phiX Sample,26,31,CT,0,26,30,2,0,40
A Fake phiX Sample,26,31,TA,1,26,30,3,0,40
A Fake phiX Sample,26,32,AA,0,26,31,1,0,40
A Fake phiX Sample,26,32,AC,1,26,31,1,0,40
A Fake phiX Sample,26,32,AC,2,26,31,1,0,40
A Fake phiX Sample,26,32,CC,1,26,31,1,0,40
A Fake phiX Sample,26,32,CT,0,26,31,1,0,40
A Fake phiX Sample,26,32,TA,1,26,31,2,0,40
A Fake phiX Sample,26,33,AA,0,26,32,1,0,40
A Fake phiX Sample,26,33,AC,1,26,32,1,0,40
A Fake phiX Sample,26,33,AC,2,26,32,1,0,40
A Fake phiX Sample,26,33,AT,0,26,32,1,0,40
A Fake phiX Sample,26,33,CC,1,26,32,1,0,40
A Fake phiX Sample,26,33,CT,0,26,32,1,0,40
A Fake phiX Sample,26,33,TA,1,26,32,1,0,40
A Fake phiX Sample,26,34,AA,0,26,33,1,0,40
A Fake phiX Sample,26,34,AC,1,26,33,1,0,40
A Fake phiX Sample,26,34,AT,0,26,33,1,0,40
A Fake phiX Sample,26,34,CC,1,26,33,1,0,40
A Fake phiX Sample,26,34,CT,0,26,33,2,0,40
A Fake phiX Sample,26,34,TA,1,26,33,1,0,40
A Fake phiX Sample,26,34,TG,0,26,33,1,0,40
A Fake phiX Sample,26,35,AA,0,26,34,1,0,40
A Fake phiX Sample,26,35,AT,0,26,34,1,0,40
A Fake phiX Sample,26,35,CT,0,26,34,2,0,40
A Fake phiX Sample,26,35,GA,0,26,34,1,0,40
A Fake phiX Sample,26,35,TA,1,26,34,2,0,40
A Fake phiX Sample,26,35,TG,0,26,34,1,0,40
A Fake phiX Sample,26,36,AA,0,26,35,2,0,40
A Fake phiX Sample,26,36,AG,0,26,35,1,0,40
A Fake phiX Sample,26,36,AT,0,26,35,1,0,40
A Fake phiX Sample,26,36,CT,0,26,35,2,0,40
A Fake phiX Sample,26,36,GA,0,26,35,1,0,40
A Fake phiX Sample,26,36,TA,0,26,35,2,0,40
A Fake phiX Sample,26,36,TG,0,26,35,1,0,40
EOF